Art FY Poon
Title
Cited by
Cited by
Year
Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology
W Delport, AFY Poon, SDW Frost, SL Kosakovsky Pond
Bioinformatics 26 (19), 2455-2457, 2010
1165*2010
Compensating for our load of mutations: freezing the meltdown of small populations
A Poon, SP Otto
Evolution 54 (5), 1467-1479, 2000
1922000
The rate of compensatory mutation in the DNA bacteriophage φX174
A Poon, L Chao
Genetics 170 (3), 989-999, 2005
1682005
An evolutionary model-based algorithm for accurate phylogenetic breakpoint mapping and subtype prediction in HIV-1
SL Kosakovsky Pond, D Posada, E Stawiski, C Chappey, AFY Poon, ...
PLoS computational biology 5 (11), e1000581, 2009
1662009
Near real-time monitoring of HIV transmission hotspots from routine HIV genotyping: an implementation case study
AFY Poon, R Gustafson, P Daly, L Zerr, SE Demlow, J Wong, CK Woods, ...
The lancet HIV 3 (5), e231-e238, 2016
1352016
Characterizing HIV transmission networks across the United States
JL Aldous, SK Pond, A Poon, S Jain, H Qin, JS Kahn, M Kitahata, ...
Clinical Infectious Diseases 55 (8), 1135-1143, 2012
1292012
Immune-driven recombination and loss of control after HIV superinfection
H Streeck, B Li, AFY Poon, A Schneidewind, AD Gladden, KA Power, ...
The Journal of experimental medicine 205 (8), 1789-1796, 2008
1252008
An evolutionary-network model reveals stratified interactions in the V3 loop of the HIV-1 envelope
AFY Poon, FI Lewis, SLK Pond, SDW Frost
PLoS computational biology 3 (11), e231, 2007
1052007
Ancestral reconstruction
JB Joy, RH Liang, RM McCloskey, T Nguyen, AFY Poon
PLoS computational biology 12 (7), e1004763, 2016
992016
The coupon collector and the suppressor mutation: estimating the number of compensatory mutations by maximum likelihood
A Poon, BH Davis, L Chao
Genetics 170 (3), 1323-1332, 2005
962005
A maximum likelihood method for detecting directional evolution in protein sequences and its application to influenza A virus
SL Kosakovsky Pond, AFY Poon, AJ Leigh Brown, SDW Frost
Molecular biology and evolution 25 (9), 1809-1824, 2008
952008
Detecting signatures of selection from DNA sequences using Datamonkey
AFY Poon, SDW Frost, SLK Pond
Bioinformatics for DNA Sequence Analysis, 163-183, 2009
912009
The impact of clinical, demographic and risk factors on rates of HIV transmission: a population-based phylogenetic analysis in British Columbia, Canada
AFY Poon, JB Joy, CK Woods, S Shurgold, G Colley, CJ Brumme, ...
The Journal of infectious diseases 211 (6), 926-935, 2015
902015
Evolutionary interactions between N-linked glycosylation sites in the HIV-1 envelope
AFY Poon, FI Lewis, SLK Pond, SDW Frost
PLoS computational biology 3 (1), e11, 2007
792007
Phylogenetic Analysis of Population-Based and Deep Sequencing Data to Identify Coevolving Sites in the nef Gene of HIV-1
AFY Poon, LC Swenson, WWY Dong, W Deng, SL Kosakovsky Pond, ...
Molecular biology and evolution 27 (4), 819-832, 2010
77*2010
Spidermonkey: rapid detection of co-evolving sites using Bayesian graphical models
AFY Poon, FI Lewis, SDW Frost, SL Kosakovsky Pond
Bioinformatics 24 (17), 1949-1950, 2008
772008
HyPhy 2.5—a customizable platform for evolutionary hypothesis testing using phylogenies
SL Kosakovsky Pond, AFY Poon, R Velazquez, S Weaver, NL Hepler, ...
Molecular biology and evolution 37 (1), 295-299, 2020
732020
Phylogenetic Analysis of Population-Based and Deep Sequencing Data to Identify Coevolving Sites in the nef Gene of HIV-1
AFY Poon, LC Swenson, WWY Dong, W Deng, SL Kosakovsky Pond, ...
Molecular biology and evolution 27 (4), 819-832, 2010
702010
Phylogenetic clustering of hepatitis C virus among people who inject drugs in Vancouver, Canada
B Jacka, T Applegate, M Krajden, A Olmstead, PR Harrigan, BDL Marshall, ...
Hepatology 60 (5), 1571-1580, 2014
682014
Evolutionary fingerprinting of genes
SL Kosakovsky Pond, K Scheffler, MB Gravenor, AFY Poon, SDW Frost
Molecular biology and evolution 27 (3), 520-536, 2010
682010
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Articles 1–20