Art FY Poon
Title
Cited by
Cited by
Year
Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology
W Delport, AFY Poon, SDW Frost, SL Kosakovsky Pond
Bioinformatics 26 (19), 2455-2457, 2010
1142*2010
Compensating for our load of mutations: freezing the meltdown of small populations
A Poon, SP Otto
Evolution 54 (5), 1467-1479, 2000
1782000
An evolutionary model-based algorithm for accurate phylogenetic breakpoint mapping and subtype prediction in HIV-1
SLK Pond, D Posada, E Stawiski, C Chappey, AFY Poon, G Hughes, ...
PLoS Comput Biol 5 (11), e1000581, 2009
1662009
The rate of compensatory mutation in the DNA bacteriophage φX174
A Poon, L Chao
Genetics 170 (3), 989-999, 2005
1652005
Near real-time monitoring of HIV transmission hotspots from routine HIV genotyping: an implementation case study
AFY Poon, R Gustafson, P Daly, L Zerr, SE Demlow, J Wong, CK Woods, ...
The lancet HIV 3 (5), e231-e238, 2016
1312016
Immune-driven recombination and loss of control after HIV superinfection
H Streeck, B Li, AFY Poon, A Schneidewind, AD Gladden, KA Power, ...
The Journal of experimental medicine 205 (8), 1789-1796, 2008
1252008
Characterizing HIV transmission networks across the United States
JL Aldous, SK Pond, A Poon, S Jain, H Qin, JS Kahn, M Kitahata, ...
Clinical Infectious Diseases 55 (8), 1135-1143, 2012
1232012
An evolutionary-network model reveals stratified interactions in the V3 loop of the HIV-1 envelope
AFY Poon, FI Lewis, SLK Pond, SDW Frost
PLoS Comput Biol 3 (11), e231, 2007
1032007
The coupon collector and the suppressor mutation: estimating the number of compensatory mutations by maximum likelihood
A Poon, BH Davis, L Chao
Genetics 170 (3), 1323-1332, 2005
952005
A maximum likelihood method for detecting directional evolution in protein sequences and its application to influenza A virus
SL Kosakovsky Pond, AFY Poon, AJ Leigh Brown, SDW Frost
Molecular biology and evolution 25 (9), 1809-1824, 2008
942008
The impact of clinical, demographic and risk factors on rates of HIV transmission: a population-based phylogenetic analysis in British Columbia, Canada
AFY Poon, JB Joy, CK Woods, S Shurgold, G Colley, CJ Brumme, ...
The Journal of infectious diseases 211 (6), 926-935, 2015
892015
Ancestral reconstruction
JB Joy, RH Liang, RM McCloskey, T Nguyen, AFY Poon
PLoS computational biology 12 (7), e1004763, 2016
882016
Detecting signatures of selection from DNA sequences using Datamonkey
AFY Poon, SDW Frost, SLK Pond
Bioinformatics for DNA Sequence Analysis, 163-183, 2009
872009
Phylogenetic Analysis of Population-Based and Deep Sequencing Data to Identify Coevolving Sites in the nef Gene of HIV-1
AFY Poon, LC Swenson, WWY Dong, W Deng, SL Kosakovsky Pond, ...
Molecular biology and evolution 27 (4), 819-832, 2010
80*2010
Evolutionary interactions between N-linked glycosylation sites in the HIV-1 envelope
AFY Poon, FI Lewis, SLK Pond, SDW Frost
PLoS computational biology 3 (1), e11, 2007
782007
Spidermonkey: rapid detection of co-evolving sites using Bayesian graphical models
AFY Poon, FI Lewis, SDW Frost, SL Kosakovsky Pond
Bioinformatics 24 (17), 1949-1950, 2008
732008
Phylogenetic Analysis of Population-Based and Deep Sequencing Data to Identify Coevolving Sites in the nef Gene of HIV-1
AFY Poon, LC Swenson, WWY Dong, W Deng, SL Kosakovsky Pond, ...
Molecular biology and evolution 27 (4), 819-832, 2010
712010
Evolutionary fingerprinting of genes
SL Kosakovsky Pond, K Scheffler, MB Gravenor, AFY Poon, SDW Frost
Molecular biology and evolution 27 (3), 520-536, 2010
692010
Phylogenetic clustering of hepatitis C virus among people who inject drugs in Vancouver, Canada
B Jacka, T Applegate, M Krajden, A Olmstead, PR Harrigan, BDL Marshall, ...
Hepatology 60 (5), 1571-1580, 2014
662014
Compensatory mutations are repeatable and clustered within proteins
BH Davis, AFY Poon, MC Whitlock
Proceedings of the Royal Society B: Biological Sciences 276 (1663), 1823-1827, 2009
652009
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Articles 1–20