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Harun Mustafa
Harun Mustafa
Postdoctoral fellow, ETH Zürich
Verified email at inf.ethz.ch
Title
Cited by
Cited by
Year
A global metagenomic map of urban microbiomes and antimicrobial resistance
D Danko, D Bezdan, EE Afshin, S Ahsanuddin, C Bhattacharya, DJ Butler, ...
Cell 184 (13), 3376-3393. e17, 2021
251*2021
Biosynthetic potential of the global ocean microbiome
L Paoli, HJ Ruscheweyh, CC Forneris, F Hubrich, S Kautsar, A Bhushan, ...
Nature 607 (7917), 111-118, 2022
1732022
GenStore: a high-performance in-storage processing system for genome sequence analysis
N Mansouri Ghiasi, J Park, H Mustafa, J Kim, A Olgun, A Gollwitzer, ...
Proceedings of the 27th ACM International Conference on Architectural …, 2022
79*2022
Communication-efficient jaccard similarity for high-performance distributed genome comparisons
M Besta, R Kanakagiri, H Mustafa, M Karasikov, G Rätsch, T Hoefler, ...
2020 IEEE International Parallel and Distributed Processing Symposium (IPDPS …, 2020
772020
Metagraph: Indexing and analysing nucleotide archives at petabase-scale
M Karasikov, H Mustafa, D Danciu, M Zimmermann, C Barber, G Rätsch, ...
bioRxiv, 2020
51*2020
Dynamic compression schemes for graph coloring
H Mustafa, I Schilken, M Karasikov, C Eickhoff, G Rätsch, A Kahles
Bioinformatics 35 (3), 407-414, 2019
34*2019
AStarix: Fast and Optimal Sequence-to-Graph Alignment
P Ivanov, B Bichsel, H Mustafa, A Kahles, G Rätsch, M Vechev
International Conference on Research in Computational Molecular Biology, 104-119, 2020
262020
Detecting Alu insertions from high-throughput sequencing data
M David, H Mustafa, M Brudno
Nucleic acids research 41 (17), e169-e169, 2013
232013
Lossless indexing with counting de bruijn graphs
M Karasikov, H Mustafa, G Rätsch, A Kahles
Genome Research 32 (9), 1754-1764, 2022
202022
Sparse binary relation representations for genome graph annotation
M Karasikov, H Mustafa, A Joudaki, S Javadzadeh-No, G Rätsch, ...
Research in Computational Molecular Biology: 23rd Annual International …, 2019
202019
Sequence-based prediction of permissive stretches for internal protein tagging and knockdown
S Oesterle, TM Roberts, LA Widmer, H Mustafa, S Panke, S Billerbeck
BMC biology 15, 1-17, 2017
152017
META: Memory-efficient taxonomic classification and abundance estimation for metagenomics with deep learning
A Georgiou, V Fortuin, H Mustafa, G Rätsch
arXiv preprint arXiv:1909.13146, 2019
10*2019
Topology-based sparsification of graph annotations
D Danciu, M Karasikov, H Mustafa, A Kahles, G Rätsch
Bioinformatics 37 (Supplement_1), i169-i176, 2021
7*2021
Aligning distant sequences to graphs using long seed sketches
A Joudaki, A Meterez, H Mustafa, RG Koerkamp, A Kahles, G Rätsch
Genome Research, gr. 277659.123, 2023
52023
Assembly and characterization of novel Alu inserts detected from next-generation sequencing data
H Mustafa, M David, M Brudno
Mobile genetic elements 4 (5), 1-7, 2014
42014
Label-guided seed-chain-extend alignment on annotated De Bruijn graphs
H Mustafa, M Karasikov, N Mansouri Ghiasi, G Rätsch, A Kahles
bioRxiv, 2022.11. 04.514718, 2024
3*2024
MetaStore: High-Performance Metagenomic Analysis via In-Storage Computing
N Mansouri Ghiasi, M Sadrosadati, H Mustafa, A Gollwitzer, C Firtina, ...
arXiv e-prints, arXiv: 2311.12527, 2023
2023
Microbiomics boosts mining of natural products from the ocean
L Paoli, HJ Ruscheweyh, CC Forneris, F Hubrich, S Kautsar, A Bhushan, ...
2023
Algorithms for efficient sensitive search and sample comparison on petabase-scale genomics data
H Mustafa
ETH Zurich, 2022
2022
Model Decarboxylated Schiff base of Asparagine as a Precursor in Carcinogenic Acrylamide Formation
FY Gao, A Dodin, H Mustafa, NJ Galant, IG Csizmadia
Journal of Undergraduate Life Sciences• Volume 7 (1), 2013
2013
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Articles 1–20