| MethylNet: an automated and modular deep learning approach for DNA methylation analysis JJ Levy, AJ Titus, CL Petersen, Y Chen, LA Salas, BC Christensen BMC bioinformatics 21, 1-15, 2020 | 107 | 2020 |
| Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors SP Gordon, B Contreras-Moreira, JJ Levy, A Djamei, A Czedik-Eysenberg, ... Nature Communications 11 (1), 3670, 2020 | 81 | 2020 |
| Don’t dismiss logistic regression: the case for sensible extraction of interactions in the era of machine learning JJ Levy, AJ O’Malley BMC medical research methodology 20 (1), 171, 2020 | 78 | 2020 |
| Topological feature extraction and visualization of whole slide images using graph neural networks J Levy, C Haudenschild, C Barwick, B Christensen, L Vaickus BIOCOMPUTING 2021: Proceedings of the Pacific Symposium, 285-296, 2020 | 61 | 2020 |
| A large-scale internal validation study of unsupervised virtual trichrome staining technologies on nonalcoholic steatohepatitis liver biopsies JJ Levy, N Azizgolshani, MJ Andersen Jr, A Suriawinata, X Liu, ... Modern Pathology 34 (4), 808-822, 2021 | 42 | 2021 |
| Applications of artificial intelligence in orthopaedic surgery F Farhadi, MR Barnes, HR Sugito, JM Sin, ER Henderson, JJ Levy Frontiers in medical technology 4, 995526, 2022 | 40 | 2022 |
| Preliminary Evaluation of the Utility of Deep Generative Histopathology Image Translation at a Mid-sized NCI Cancer Center J Levy, C Jackson, A Sriharan, B Christensen, L Vaickus Proceedings of the 13th International Joint Conference on Biomedical …, 2020 | 28 | 2020 |
| Comparison of machine-learning algorithms for the prediction of current procedural terminology (CPT) codes from pathology reports J Levy, N Vattikonda, C Haudenschild, B Christensen, L Vaickus Journal of Pathology Informatics 13, 100165, 2022 | 25 | 2022 |
| PathFlowAI: a high-throughput workflow for preprocessing, deep learning and interpretation in digital pathology JJ Levy, LA Salas, BC Christensen, A Sriharan, LJ Vaickus PACIFIC SYMPOSIUM ON BIOCOMPUTING 2020, 403-414, 2019 | 25 | 2019 |
| Using molecular testing to improve the management of thyroid nodules with indeterminate cytology: an institutional experience with review of molecular alterations RE Glass, JD Marotti, DA Kerr, JJ Levy, LJ Vaickus, EJ Gutmann, LJ Tafe, ... Journal of the American Society of Cytopathology 11 (2), 79-86, 2022 | 20 | 2022 |
| Atypia of undetermined significance in thyroid cytology: nuclear atypia and architectural atypia are associated with different molecular alterations and risks of malignancy RE Glass, JJ Levy, SA Motanagh, LJ Vaickus, X Liu Cancer Cytopathology 129 (12), 966-972, 2021 | 19 | 2021 |
| DNA 5-hydroxymethylcytosine in pediatric central nervous system tumors may impact tumor classification and is a positive prognostic marker N Azizgolshani, CL Petersen, Y Chen, JJ Levy, LA Salas, L Perreard, ... Clinical epigenetics 13, 1-17, 2021 | 18 | 2021 |
| Leveraging unstructured electronic medical record notes to derive population-specific suicide risk models M Levis, J Levy, V Dufort, GT Gobbel, BV Watts, B Shiner Psychiatry research 315, 114703, 2022 | 17 | 2022 |
| Evaluating the mediating effects of perceived vulnerability to disease in the relation between disgust and contamination-based OCD RE Brady, CL Badour, EA Arega, JJ Levy, TG Adams Journal of Anxiety Disorders 79, 102384, 2021 | 15 | 2021 |
| PolyCRACKER, a robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution SP Gordon, JJ Levy, JP Vogel BMC genomics 20, 1-14, 2019 | 15 | 2019 |
| PyMethylProcess—convenient high-throughput preprocessing workflow for DNA methylation data JJ Levy, AJ Titus, LA Salas, BC Christensen Bioinformatics 35 (24), 5379-5381, 2019 | 14 | 2019 |
| Comparison of symptoms and antibody response following administration of Moderna or Pfizer SARS-CoV-2 vaccines MT Kelliher, JJ Levy, RD Nerenz, B Poore, AA Johnston, AR Rogers, ... Archives of Pathology & Laboratory Medicine 146 (6), 677-685, 2022 | 13 | 2022 |
| MethylSPWNet and MethylCapsNet: biologically motivated organization of DNAm neural networks, inspired by capsule networks JJ Levy, Y Chen, N Azizgolshani, CL Petersen, AJ Titus, EL Moen, ... NPJ systems biology and applications 7 (1), 33, 2021 | 13 | 2021 |
| Mixed effects machine learning models for colon cancer metastasis prediction using spatially localized immuno-oncology markers JJ Levy, CA Bobak, M Nasir-Moin, EM Veziroglu, SM Palisoul, RE Barney, ... PACIFIC SYMPOSIUM ON BIOCOMPUTING 2022, 175-186, 2021 | 13 | 2021 |
| Inferring spatial transcriptomics markers from whole slide images to characterize metastasis-related spatial heterogeneity of colorectal tumors: A pilot study M Fatemi, E Feng, C Sharma, Z Azher, T Goel, O Ramwala, SM Palisoul, ... Journal of Pathology Informatics 14, 100308, 2023 | 12 | 2023 |
Brock Christensen, Ph.D.Geisel School of Medicine at DartmouthVerified email at dartmouth.edu
