| Data-analysis strategies for image-based cell profiling JC Caicedo, S Cooper, F Heigwer, S Warchal, P Qiu, C Molnar, ... Nature methods 14 (9), 849-863, 2017 | 666 | 2017 |
| DNA damage during S-phase mediates the proliferation-quiescence decision in the subsequent G1 via p21 expression AR Barr, S Cooper, FS Heldt, F Butera, H Stoy, J Mansfeld, B Novák, ... Nature communications 8 (1), 14728, 2017 | 363 | 2017 |
| Nanoneedle-mediated stimulation of cell mechanotransduction machinery CS Hansel, SW Crowder, S Cooper, S Gopal, M João Pardelha da Cruz, ... ACS nano 13 (3), 2913-2926, 2019 | 116 | 2019 |
| Learning unsupervised feature representations for single cell microscopy images with paired cell inpainting AX Lu, OZ Kraus, S Cooper, AM Moses PLoS computational biology 15 (9), e1007348, 2019 | 98 | 2019 |
| A comprehensive model for the proliferation–quiescence decision in response to endogenous DNA damage in human cells FS Heldt, AR Barr, S Cooper, C Bakal, B Novák Proceedings of the National Academy of Sciences 115 (10), 2532-2537, 2018 | 88 | 2018 |
| Cross-talk between Rho and Rac GTPases drives deterministic exploration of cellular shape space and morphological heterogeneity H Sailem, V Bousgouni, S Cooper, C Bakal Open biology 4 (1), 130132, 2014 | 72 | 2014 |
| RNAi screens for Rho GTPase regulators of cell shape and YAP/TAZ localisation in triple negative breast cancer P Pascual-Vargas, S Cooper, J Sero, V Bousgouni, M Arias-Garcia, ... Scientific data 4 (1), 1-13, 2017 | 42 | 2017 |
| Apolar and polar transitions drive the conversion between amoeboid and mesenchymal shapes in melanoma cells S Cooper, A Sadok, V Bousgouni, C Bakal Molecular biology of the cell, mbc. E15-06-0382, 2015 | 33 | 2015 |
| NucliTrack: an integrated nuclei tracking application S Cooper, AR Barr, R Glen, C Bakal Bioinformatics 33 (20), 3320-3322, 2017 | 29 | 2017 |
| Accelerating live single-cell signalling studies S Cooper, C Bakal Trends in biotechnology 35 (5), 422-433, 2017 | 28 | 2017 |
| Visualizing quantitative microscopy data: History and challenges HZ Sailem, S Cooper, C Bakal Critical reviews in biochemistry and molecular biology 51 (2), 96-101, 2016 | 20 | 2016 |
| Society of biomolecular imaging and informatics high-content screening/high-content analysis emerging technologies in biological models, when and why? AF Hoffman, J Nolan, DF Gebhard, D Nickischer, W Omta, S Cooper, ... ASSAY and Drug Development Technologies 16 (1), 1-6, 2018 | 3 | 2018 |
| scMARK an ‘MNIST’like benchmark to evaluate and optimize models for unifying scRNA data Swechha, D Mendonca, O Focsa, JJ Díaz-Mejía, S Cooper bioRxiv, 2021.12. 08.471773, 2021 | 1 | 2021 |
| Learning Biology Through Puzzle-solving: Unbiased Automatic Understanding of Microscopy Images with Self-supervised Learning A Lu, O Kraus, S Cooper, A Moses Microscopy and Microanalysis 26 (S2), 690-692, 2020 | 1 | 2020 |
| Adversarial learning enables unbiased organism-wide cross-species alignment of single-cell RNA data at scale JJ Díaz-Mejía, E Williams, B Innes, O Focsa, D Mendonca, S Singh, ... bioRxiv, 2024.08. 11.607498, 2024 | | 2024 |
| AI/ML-driven discovery of CTHRC1, collagen triple helix repeat-containing 1, a novel proteoglycan for stroma+ tumor targeting and delivery of 4-1BB costimulation C Harvey, E Koch, A Hanson, L Rice, A Berkley, K White, R Saberianfar, ... Cancer Research 84 (6_Supplement), 2914-2914, 2024 | | 2024 |
| System and method for profiling antibodies with high-content screening (hcs) S Cooper, O Kraus, M London, G Watson, A Nixon, E Koch, È Dumoulin, ... US Patent App. 17/918,882, 2023 | | 2023 |
| Unification of over 50 published single-cell RNA datasets covering over a 1000 patient samples with deep-learning reveals novel axes of tumor microenvironment variation J Díaz-Mejía, D Mendonca, O Focsa, C Harvey, M Briskin, S Cooper Cancer Research 82 (12_Supplement), 3813-3813, 2022 | | 2022 |
| 1350 AI/ML-driven discovery of Collagen Triple Helix Repeat-Containing 1, CTHRC1, a novel proteoglycan for disruption of stromal barriers and enhancement of immunotherapy … E Koch, A Berkley, S Phippen, M London, K White, A Hanson J Immunother 10 (2), A1-A1595, 2022 | | 2022 |
| DISSECTING FIBROBLAST-MACROPHAGE COMMUNICATION IN THE FIBROTIC NICHE: From basic science to clinical translation" On the processes of fibrosis, wound care and scar management R Schuster, O Kraus, S Cooper, B Hinz Wound Repair and Regeneration 28 (2), A4-A4, 2020 | | 2020 |
