| HiRIEF LC-MS enables deep proteome coverage and unbiased proteogenomics RMM Branca, LM Orre, HJ Johansson, V Granholm, M Huss, ... Nature methods 11 (1), 59-62, 2014 | 281 | 2014 |
| Cryptococcus gattii in North American Pacific Northwest: whole-population genome analysis provides insights into species evolution and dispersal DM Engelthaler, ND Hicks, JD Gillece, CC Roe, JM Schupp, EM Driebe, ... MBio 5 (4), 10.1128/mbio. 01464-14, 2014 | 130 | 2014 |
| LogoBar: bar graph visualization of protein logos with gaps Å Pérez-Bercoff, J Koch, TR Bürglin Bioinformatics 22 (1), 112-114, 2006 | 44 | 2006 |
| Overview and comparison of ortholog databases A Alexeyenko, J Lindberg, Å Pérez-Bercoff, ELL Sonnhammer Drug Discovery Today: Technologies 3 (2), 137-143, 2006 | 41 | 2006 |
| Low frequency of mtDNA point mutations in patients with PEO associated with POLG1 mutations G Kollberg, M Jansson, Å Pérez-Bercoff, A Melberg, C Lindberg, E Holme, ... European journal of human genetics 13 (4), 463-469, 2005 | 39 | 2005 |
| Patterns of indirect protein interactions suggest a spatial organization to metabolism Å Pérez-Bercoff, A McLysaght, GC Conant Molecular BioSystems 7 (11), 3056-3064, 2011 | 36 | 2011 |
| Draft genome of Australian environmental strain WM 09.24 of the opportunistic human pathogen Scedosporium aurantiacum Å Pérez-Bercoff, A Papanicolaou, M Ramsperger, J Kaur, HR Patel, ... Genome Announcements 3 (1), e01526-14, 2015 | 24 | 2015 |
| Whole CMV proteome pattern recognition analysis after HSCT identifies unique epitope targets associated with the CMV status L Perez-Bercoff, D Valentini, S Gaseitsiwe, S Mahdavifar, M Schutkowski, ... PLoS One 9 (4), e89648, 2014 | 20 | 2014 |
| Duplicability of self-interacting human genes Å Pérez-Bercoff, T Makino, A McLysaght BMC Evolutionary Biology 10, 1-8, 2010 | 20 | 2010 |
| Computational prediction of disordered protein motifs using SLiMSuite RJ Edwards, K Paulsen, CM Aguilar Gomez, Å Pérez-Bercoff Intrinsically Disordered Proteins: Methods and Protocols, 37-72, 2020 | 17 | 2020 |
| A conserved mammalian protein interaction network Å Pérez-Bercoff, CM Hudson, GC Conant PloS one 8 (1), e52581, 2013 | 14 | 2013 |
| SLiMEnrich: computational assessment of protein–protein interaction data as a source of domain-motif interactions S Idrees, Å Pérez-Bercoff, RJ Edwards PeerJ 6, e5858, 2018 | 13 | 2018 |
| Cryptococcus gattii in North American Pacific Northwest: whole-population genome analysis provides insights into species evolution and dispersal. mBio 5 (4): e01464-14 DM Engelthaler, ND Hicks, JD Gillece, CC Roe, JM Schupp, EM Driebe, ... | 5 | 2014 |
| Draft genome of Australian environmental strain WM 09.24 of the opportunistic human pathogen Scedosporium aurantiacum. Genome Announc 3 (1): e01526-14 Å Pérez-Bercoff, A Papanicolaou, M Ramsperger, J Kaur, HR Patel, ... | 3 | 2015 |
| LogoBar-Visualizing protein sequence logos with gaps Å Pérez-Bercoff, TR Bürglin, GPC Fung Sequence and Genome Analysis: Methods and Applications II. iConcept Press …, 2010 | 2 | 2010 |
| Evolutionary changes in soil bacterial communities due to 3-or 4-chlorophenol enrichment and inoculation with the 4-chlorophenol degrading strain Arthrobacter chlorophenolicus Å Pérez-Bercoff Södertörns Högskola (University College), 2003 | 2 | 2003 |
| SLiMScape 3. x: a Cytoscape 3 app for discovery of Short Linear Motifs in protein interaction networks E Olorin, KT O'Brien, N Palopoli, Å Pérez-Bercoff, DC Shields, ... F1000Research 4, 2015 | 1 | 2015 |
| Motifs in protein interaction networks [version 1; referees: 2 approved] E Olorin, KT O'Brien, N Palopoli, Å Pérez-Bercoff, DC Shields, ... | | 2015 |
| Motifs in protein interaction networks [version 1; referees: 2 E Olorin, KT O'Brien, N Palopoli, Å Pérez-Bercoff, DC Shields, ... | | 2015 |
| Function and evolution of genes in the human protein interaction network Å Pérez-Bercoff Trinity College Dublin, 2012 | | 2012 |
