| GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologies JS Kim, DS Cali, H Xin, D Lee, S Ghose, M Alser, H Hassan, O Ergin, ... BMC genomics 19 (2), 23-40, 2018 | 60 | 2018 |
| GateKeeper: A New Hardware Architecture for Accelerating Pre-Alignment in DNA Short Read Mapping M Alser, H Hassan, H Xin, O Ergin, O Mutlu, C Alkan Bioinformatics, 2017 | 57 | 2017 |
| Shouji: a fast and efficient pre-alignment filter for sequence alignment M Alser, H Hassan, A Kumar, O Mutlu, C Alkan Bioinformatics 35 (21), 4255-4263, 2019 | 22 | 2019 |
| MAGNET: understanding and improving the accuracy of genome pre-alignment filtering M Alser, O Mutlu, C Alkan arXiv preprint arXiv:1707.01631, 2017 | 15 | 2017 |
| Design and modeling of low-power clockless serial link for data communication systems MH Alser, MM Assaad 2011 National Postgraduate Conference, 1-5, 2011 | 10 | 2011 |
| GRIM-Filter: fast seed filtering in read mapping using emerging memory technologies JS Kim, D Senol, H Xin, D Lee, S Ghose, M Alser, H Hassan, O Ergin, ... arXiv preprint arXiv:1708.04329, 2017 | 9 | 2017 |
| Apollo: a sequencing-technology-independent, scalable and accurate assembly polishing algorithm C Firtina, JS Kim, M Alser, D Senol Cali, AE Cicek, C Alkan, O Mutlu Bioinformatics 36 (12), 3669-3679, 2020 | 8* | 2020 |
| Can you Really Anonymize the Donors of Genomic Data in Today’s Digital World? M Alser, N Almadhoun, A Nouri, C Alkan, E Ayday Data Privacy Management, and Security Assurance, 237-244, 2015 | 8* | 2015 |
| An FPGA-based design and implementation of an all-digital serializer for inter module communication in SoC M Assaad, M Alser IEICE Electronics Express 8 (23), 2017-2023, 2011 | 8 | 2011 |
| Techniques for Reducing the Connected-Standby Energy Consumption of Mobile Devices J Haj-Yahya, Y Sazeides, M Alser, E Rotem, O Mutlu 2020 IEEE International Symposium on High Performance Computer Architecture …, 2020 | 7 | 2020 |
| Genome read in-memory (GRIM) filter: Fast location filtering in DNA read mapping using emerging memory technologies J Kim, D Senol, H Xin, D Lee, M Alser, H Hassan, O Ergin, C Alkan, ... Pacific Symp. Biocomputing, 2017 | 7 | 2017 |
| SysScale: Exploiting Multi-domain Dynamic Voltage and Frequency Scaling for Energy Efficient Mobile Processors J Haj-Yahya, M Alser, J Kim, AG Yaglıkçı, N Vijaykumar, E Rotem, O Mutlu arXiv preprint arXiv:2005.07613, 2020 | 6 | 2020 |
| SneakySnake: A Fast and Accurate Universal Genome Pre-Alignment Filter for CPUs, GPUs, and FPGAs M Alser, T Shahroodi, J Gomez-Luna, C Alkan, O Mutlu arXiv preprint arXiv:1910.09020, 2019 | 5 | 2019 |
| GenASM: A High-Performance, Low-Power Approximate String Matching Acceleration Framework for Genome Sequence Analysis DS Cali, GS Kalsi, Z Bingöl, C Firtina, L Subramanian, JS Kim, ... 2020 53rd Annual IEEE/ACM International Symposium on Microarchitecture …, 2020 | 4 | 2020 |
| Accelerating Genome Analysis: A Primer on an Ongoing Journey M Alser, Z Bingöl, DS Cali, J Kim, S Ghose, C Alkan, O Mutlu IEEE Micro 40 (5), 65-75, 2020 | 4 | 2020 |
| Design and fpga implementation of pll-based quarter-rate clock and data recovery circuit MH Alser, M Assaad, FA Hussin, I Yohannes 2012 4th International Conference on Intelligent and Advanced Systems …, 2012 | 4 | 2012 |
| Technology dictates algorithms: Recent developments in read alignment M Alser, J Rotman, K Taraszka, H Shi, PI Baykal, HT Yang, V Xue, ... arXiv preprint arXiv:2003.00110, 2020 | 3 | 2020 |
| Design of an all-digital synchronized frequency multiplier based on a dual-loop (D/FLL) architecture M Assaad, MH Alser VLSI Design 2012, 2012 | 3 | 2012 |
| NATSA: A Near-Data Processing Accelerator for Time Series Analysis I Fernandez, R Quislant, E Gutiérrez, O Plata, C Giannoula, M Alser, ... 2020 IEEE 38th International Conference on Computer Design (ICCD), 120-129, 2020 | 2 | 2020 |
| GenASM: A Low-Power, Memory-Efficient Approximate String Matching Acceleration Framework for Genome Sequence Analysis DS Cali, G Kalsi, Z Bingöl, L Subramanian, C Firtina, J Kim, ... Proc. 53rd Int. Symp. Microarchitecture, 2020 | 2 | 2020 |
Onur MutluETH Zürich and Carnegie Mellon UniversityVerified email at inf.ethz.ch
