Christina Boucher
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MEGARes: an antimicrobial resistance database for high throughput sequencing
SM Lakin, C Dean, NR Noyes, A Dettenwanger, AS Ross, E Doster, ...
Nucleic acids research 45 (D1), D574-D580, 2017
Use of metagenomic shotgun sequencing technology to detect foodborne pathogens within the microbiome of the beef production chain
X Yang, NR Noyes, E Doster, JN Martin, LM Linke, RJ Magnuson, H Yang, ...
Applied and Environmental Microbiology 82 (8), 2433-2443, 2016
Succinct colored de Bruijn graphs
MD Muggli, A Bowe, NR Noyes, PS Morley, KE Belk, R Raymond, T Gagie, ...
Bioinformatics 33 (20), 3181-3187, 2017
Resistome diversity in cattle and the environment decreases during beef production
NR Noyes, X Yang, LM Linke, RJ Magnuson, A Dettenwanger, S Cook, ...
Elife 5, e13195, 2016
Characterization of the resistome in manure, soil and wastewater from dairy and beef production systems
NR Noyes, X Yang, LM Linke, RJ Magnuson, SR Cook, R Zaheer, H Yang, ...
Scientific Reports 6 (1), 1-12, 2016
SEQuel: improving the accuracy of genome assemblies
R Ronen, C Boucher, H Chitsaz, P Pevzner
Bioinformatics 28 (12), i188-i196, 2012
Exploring non-touchscreen gestures for smartwatches
SS Arefin Shimon, C Lutton, Z Xu, S Morrison-Smith, C Boucher, J Ruiz
Proceedings of the 2016 chi conference on human factors in computing systems …, 2016
The SLOW GROWTH3 Pentatricopeptide Repeat Protein Is Required for the Splicing of Mitochondrial NADH Dehydrogenase Subunit7 Intron 2 in Arabidopsis  
WY Hsieh, JC Liao, CY Chang, T Harrison, C Boucher, MH Hsieh
Plant Physiology 168 (2), 490-501, 2015
Variable-order de Bruijn graphs
C Boucher, A Bowe, T Gagie, SJ Puglisi, K Sadakane
2015 data compression conference, 383-392, 2015
MEGARes 2.0: a database for classification of antimicrobial drug, biocide and metal resistance determinants in metagenomic sequence data
E Doster, SM Lakin, CJ Dean, C Wolfe, JG Young, C Boucher, KE Belk, ...
Nucleic acids research 48 (D1), D561-D569, 2020
Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable
C Mavian, SK Pond, S Marini, BR Magalis, AM Vandamme, S Dellicour, ...
Proceedings of the National Academy of Sciences 117 (23), 12522-12523, 2020
Misassembly detection using paired-end sequence reads and optical mapping data
MD Muggli, SJ Puglisi, R Ronen, C Boucher
Bioinformatics 31 (12), i80-i88, 2015
Efficient indexed alignment of contigs to optical maps
MD Muggli, SJ Puglisi, C Boucher
International Workshop on Algorithms in Bioinformatics, 68-81, 2014
Enrichment allows identification of diverse, rare elements in metagenomic resistome-virulome sequencing
NR Noyes, ME Weinroth, JK Parker, CJ Dean, SM Lakin, RA Raymond, ...
Microbiome 5 (1), 1-13, 2017
Efficient construction of a complete index for pan-genomics read alignment
A Kuhnle, T Mun, C Boucher, T Gagie, B Langmead, G Manzini
Journal of Computational Biology 27 (4), 500-513, 2020
Prefix-free parsing for building big BWTs
C Boucher, T Gagie, A Kuhnle, B Langmead, G Manzini, T Mun
Algorithms for Molecular Biology 14 (1), 1-15, 2019
Characterization of the microbial resistome in conventional and “raised without antibiotics” beef and dairy production systems
P Rovira, T McAllister, SM Lakin, SR Cook, E Doster, NR Noyes, ...
Frontiers in microbiology 10, 1980, 2019
Investigating effects of tulathromycin metaphylaxis on the fecal resistome and microbiome of commercial feedlot cattle early in the feeding period
E Doster, P Rovira, NR Noyes, BA Burgess, X Yang, MD Weinroth, ...
Frontiers in microbiology 9, 1715, 2018
Targeted enrichment for pathogen detection and characterization in three felid species
JS Lee, RS Mackie, T Harrison, B Shariat, T Kind, T Kehl, M Löchelt, ...
Journal of clinical microbiology 55 (6), 1658-1670, 2017
Building large updatable colored de Bruijn graphs via merging
Bioinformatics, 2019
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Articles 1–20