Claus Lundegaard
Claus Lundegaard
Unknown affiliation
Verified email at cbs.dtu.dk
Title
Cited by
Cited by
Year
Reliable prediction of T‐cell epitopes using neural networks with novel sequence representations
M Nielsen, C Lundegaard, P Worning, SL Lauemøller, K Lamberth, ...
Protein Science 12 (5), 1007-1017, 2003
8582003
NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8–11
C Lundegaard, K Lamberth, M Harndahl, S Buus, O Lund, M Nielsen
Nucleic acids research 36 (suppl_2), W509-W512, 2008
6222008
A generic method for assignment of reliability scores applied to solvent accessibility predictions
B Petersen, TN Petersen, P Andersen, M Nielsen, C Lundegaard
BMC structural biology 9 (1), 51, 2009
5752009
NetMHCpan, a method for quantitative predictions of peptide binding to any HLA-A and-B locus protein of known sequence
M Nielsen, C Lundegaard, T Blicher, K Lamberth, M Harndahl, S Justesen, ...
PloS one 2 (8), e796, 2007
4382007
Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method
M Nielsen, C Lundegaard, O Lund
BMC bioinformatics 8 (1), 238, 2007
3902007
Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction
MV Larsen, C Lundegaard, K Lamberth, S Buus, O Lund, M Nielsen
BMC bioinformatics 8 (1), 424, 2007
3732007
CPHmodels-3.0—remote homology modeling using structure-guided sequence profiles
M Nielsen, C Lundegaard, O Lund, TN Petersen
Nucleic acids research 38 (suppl_2), W576-W581, 2010
3692010
The role of the proteasome in generating cytotoxic T-cell epitopes: insights obtained from improved predictions of proteasomal cleavage
M Nielsen, C Lundegaard, O Lund, C Keşmir
Immunogenetics 57 (1-2), 33-41, 2005
3632005
Immune epitope database analysis resource
Y Kim, J Ponomarenko, Z Zhu, D Tamang, P Wang, J Greenbaum, ...
Nucleic acids research 40 (W1), W525-W530, 2012
3232012
A community resource benchmarking predictions of peptide binding to MHC-I molecules
B Peters, HH Bui, S Frankild, M Nielsen, C Lundegaard, E Kostem, ...
PLoS Comput Biol 2 (6), e65, 2006
3162006
Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach
M Nielsen, C Lundegaard, P Worning, CS Hvid, K Lamberth, S Buus, ...
Bioinformatics 20 (9), 1388-1397, 2004
3092004
Reliable B cell epitope predictions: impacts of method development and improved benchmarking
JV Kringelum, C Lundegaard, O Lund, M Nielsen
PLoS Comput Biol 8 (12), e1002829, 2012
3052012
An integrative approach to CTL epitope prediction: a combined algorithm integrating MHC class I binding, TAP transport efficiency, and proteasomal cleavage predictions
MV Larsen, C Lundegaard, K Lamberth, S Buus, S Brunak, O Lund, ...
European journal of immunology 35 (8), 2295-2303, 2005
2962005
Definition of supertypes for HLA molecules using clustering of specificity matrices
O Lund, M Nielsen, C Kesmir, AG Petersen, C Lundegaard, P Worning, ...
Immunogenetics 55 (12), 797-810, 2004
2712004
Immune epitope database analysis resource (IEDB-AR)
Q Zhang, P Wang, Y Kim, P Haste-Andersen, J Beaver, PE Bourne, ...
Nucleic acids research 36 (suppl_2), W513-W518, 2008
2632008
Quantitative predictions of peptide binding to any HLA-DR molecule of known sequence: NetMHCIIpan
M Nielsen, C Lundegaard, T Blicher, B Peters, A Sette, S Justesen, ...
PLoS Comput Biol 4 (7), e1000107, 2008
2342008
NetMHCcons: a consensus method for the major histocompatibility complex class I predictions
E Karosiene, C Lundegaard, O Lund, M Nielsen
Immunogenetics 64 (3), 177-186, 2012
2292012
Prediction of protein secondary structure at 80% accuracy
TN Petersen, C Lundegaard, M Nielsen, H Bohr, J Bohr, S Brunak, ...
Proteins: Structure, Function, and Bioinformatics 41 (1), 17-20, 2000
1962000
Accurate approximation method for prediction of class I MHC affinities for peptides of length 8, 10 and 11 using prediction tools trained on 9mers
C Lundegaard, O Lund, M Nielsen
Bioinformatics 24 (11), 1397-1398, 2008
1912008
MHC class II epitope predictive algorithms
M Nielsen, O Lund, S Buus, C Lundegaard
Immunology 130 (3), 319-328, 2010
1852010
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