Tomas Babak
Tomas Babak
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TitleCited byYear
Global analysis of mRNA localization reveals a prominent role in organizing cellular architecture and function
E Lécuyer, H Yoshida, N Parthasarathy, C Alm, T Babak, T Cerovina, ...
Cell 131 (1), 174-187, 2007
Probing microRNAs with microarrays: tissue specificity and functional inference
T Babak, WEN Zhang, Q Morris, BJ Blencowe, TR Hughes
Rna 10 (11), 1813-1819, 2004
Using expression profiling data to identify human microRNA targets
JC Huang, T Babak, TW Corson, G Chua, S Khan, BL Gallie, TR Hughes, ...
Nature methods 4 (12), 1045-1049, 2007
A quantitative atlas of polyadenylation in five mammals
A Derti, P Garrett-Engele, KD MacIsaac, RC Stevens, S Sriram, R Chen, ...
Genome research 22 (6), 1173-1183, 2012
Revealing global regulatory features of mammalian alternative splicing using a quantitative microarray platform
Q Pan, O Shai, C Misquitta, W Zhang, AL Saltzman, N Mohammad, ...
Molecular cell 16 (6), 929-941, 2004
Conservation of core gene expression in vertebrate tissues
ET Chan, GT Quon, G Chua, T Babak, M Trochesset, RA Zirngibl, J Aubin, ...
Journal of biology 8 (3), 33, 2009
Global survey of escape from X inactivation by RNA-sequencing in mouse
F Yang, T Babak, J Shendure, CM Disteche
Genome research 20 (5), 614-622, 2010
SMAUG is a major regulator of maternal mRNA destabilization in Drosophila and its translation is activated by the PAN GU kinase
W Tadros, AL Goldman, T Babak, F Menzies, L Vardy, T Orr-Weaver, ...
Developmental cell 12 (1), 143-155, 2007
Critical evaluation of imprinted gene expression by RNA–Seq: a new perspective
B DeVeale, D Van Der Kooy, T Babak
PLoS genetics 8 (3), 2012
Digital transcriptome profiling using selective hexamer priming for cDNA synthesis
CD Armour, JC Castle, R Chen, T Babak, P Loerch, S Jackson, JK Shah, ...
Nature methods 6 (9), 647, 2009
Global survey of genomic imprinting by transcriptome sequencing
T Babak, B DeVeale, C Armour, C Raymond, MA Cleary, D van der Kooy, ...
Current biology 18 (22), 1735-1741, 2008
Global analysis of the evolution and mechanism of echinocandin resistance in Candida glabrata
SD Singh-Babak, T Babak, S Diezmann, JA Hill, JL Xie, YL Chen, ...
PLoS pathogens 8 (5), 2012
miRNA and piRNA localization in the male mammalian meiotic nucleus
E Marcon, T Babak, G Chua, T Hughes, PB Moens
Chromosome Research 16 (2), 243-260, 2008
Functional coordination of alternative splicing in the mammalian central nervous system
M Fagnani, Y Barash, JY Ip, C Misquitta, Q Pan, AL Saltzman, O Shai, ...
Genome biology 8 (6), R108, 2007
Genetic conflict reflected in tissue-specific maps of genomic imprinting in human and mouse
T Babak, B DeVeale, EK Tsang, Y Zhou, X Li, KS Smith, KR Kukurba, ...
Nature genetics 47 (5), 544, 2015
A systematic search for new mammalian noncoding RNAs indicates little conserved intergenic transcription
T Babak, BJ Blencowe, TR Hughes
BMC genomics 6 (1), 104, 2005
Considerations in the identification of functional RNA structural elements in genomic alignments
T Babak, BJ Blencowe, TR Hughes
BMC bioinformatics 8 (1), 33, 2007
Dynamics of gene silencing during X inactivation using allele-specific RNA-seq
H Marks, HHD Kerstens, TS Barakat, E Splinter, RAM Dirks, G van Mierlo, ...
Genome biology 16 (1), 149, 2015
Systematic detection of polygenic cis-regulatory evolution
HB Fraser, T Babak, J Tsang, Y Zhou, B Zhang, M Mehrabian, EE Schadt
PLoS genetics 7 (3), 2011
Detection and discovery of RNA modifications using microarrays
SL Hiley, J Jackman, T Babak, M Trochesset, QD Morris, E Phizicky, ...
Nucleic acids research 33 (1), e2-e2, 2005
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