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Zhijian Li
Zhijian Li
Postdoc, Broad Institute of MIT and Harvard & Massachusetts General Hospital
Verified email at broadinstitute.org - Homepage
Title
Cited by
Cited by
Year
Identification of transcription factor binding sites using ATAC-seq
Z Li, MH Schulz, T Look, M Begemann, M Zenke, IG Costa
Genome biology 20, 1-21, 2019
3942019
Spatial multi-omic map of human myocardial infarction
C Kuppe*, ROR Flores*, Z Li*, S Hayat, RT Levinson, X Liao, MT Hannani, ...
Nature 608 (7924), 766–777, 2022
2082022
Chromatin-accessibility estimation from single-cell ATAC-seq data with scOpen
Z Li*, C Kuppe*, S Ziegler, M Cheng, N Kabgani, S Menzel, M Zenke, ...
Nature communications 12 (1), 1-14, 2021
79*2021
Mutations and variants of ONECUT1 in diabetes
A Philippi*, S Heller*, IG Costa*, V Senée*, M Breunig, Z Li, G Kwon, ...
Nature Medicine 27 (11), 1928-1940, 2021
292021
Transcriptional changes and the role of ONECUT1 in hPSC pancreatic differentiation
S Heller, Z Li, Q Lin, R Geusz, M Breunig, M Hohwieler, X Zhang, GG Nair, ...
Communications biology 4 (1), 1298, 2021
212021
Adult human kidney organoids originate from CD24+ cells and represent an advanced model for adult polycystic kidney disease
Y Xu*, C Kuppe*, J Perales-Patón, S Hayat, J Kranz, AT Abdallah, J Nagai, ...
Nature Genetics 54 (11), 1690-1701, 2022
202022
Accelerating differential evolution based on a subset-to-subset survivor selection operator
J Guo, Z Li, S Yang
Soft Computing 23, 4113–4130, 2019
112019
MOJITOO: a fast and universal method for integration of multimodal single cell data
M Cheng, Z Li, IG Costa Filho
Bioinformatics 38 (Supplement_1), i282–i289, 2022
92022
scMEGA: Single-cell Multiomic Enhancer-based Gene Regulatory Network Inference
Z Li, J Nagai, C Kuppe, R Kramann, IG Costa Filho
Bioinformatics Advances 3 (1), 2023
72023
A lncrna identifies irf8 enhancer element in negative feedback control of dendritic cell differentiation
H Xu, Z Li, CC Kuo, K Götz, T Look, MAS de Toledo, K Seré, IG Costa, ...
Elife 12, e83342, 2023
42023
RGT: a toolbox for the integrative analysis of high throughput regulatory genomics data
Z Li, CC Kuo, F Ticconi, M Shaigan, J Gehrmann, EG Gusmao, M Allhoff, ...
BMC bioinformatics 24 (1), 79, 2023
32023
Improving the JADE algorithm by clustering successful parameters
Z Li, J Guo, S Yang
International Journal of Wireless and Mobile Computing 11 (3), 190-197, 2016
32016
Dissipative differential evolution with self-adaptive control parameters
J Guo, Z Li, W Xie, H Wang
2015 IEEE Congress on Evolutionary Computation (CEC), 3088-3095, 2015
12015
Single cell multi-omics of fibrotic kidney reveal epigenetic regulation of antioxidation and apoptosis within proximal tubule
Z Chen, L Ye, M Zhu, C Xia, J Fan, H Chen, Z Li, S Mou
Cellular and Molecular Life Sciences 81 (1), 1-16, 2024
2024
Joint genotypic and phenotypic outcome modeling improves base editing variant effect quantification
J Ryu, S Barkal, T Yu, M Jankowiak, Y Zhou, M Francoeur, QV Phan, Z Li, ...
medRxiv, 2023
2023
The Impact of Genomic Variation on Function (IGVF) Consortium
I Consortium
arXiv preprint arXiv:2307.13708, 2023
2023
Benchmarking computational methods to identify spatially variable genes and peaks
Z Li, ZM Patel, D Song, G Yan, JJ Li, L Pinello
Biorxiv, 2023.12. 02.569717, 2023
2023
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Articles 1–17