| Functional profiling of the Saccharomyces cerevisiae genome G Giaever, AM Chu, L Ni, C Connelly, L Riles, S Véronneau, S Dow, ... nature 418 (6896), 387-391, 2002 | 5214 | 2002 |
| Chemogenomic profiling: identifying the functional interactions of small molecules in yeast G Giaever, P Flaherty, J Kumm, M Proctor, C Nislow, DF Jaramillo, ... Proceedings of the National Academy of Sciences 101 (3), 793-798, 2004 | 609 | 2004 |
| Oncogenic BRAF mutation with CDKN2A inactivation is characteristic of a subset of pediatric malignant astrocytomas JD Schiffman, JG Hodgson, SR VandenBerg, P Flaherty, MYC Polley, ... Cancer research 70 (2), 512-519, 2010 | 296 | 2010 |
| Phase II Study of Gemcitabine, Carboplatin, and Iniparib As Neoadjuvant Therapy for Triple-Negative and BRCA1/2 Mutation–Associated Breast Cancer With … ML Telli, KC Jensen, S Vinayak, AW Kurian, JA Lipson, PJ Flaherty, ... Journal of Clinical Oncology 33 (17), 1895-1901, 2015 | 267 | 2015 |
| Genome-wide requirements for resistance to functionally distinct DNA-damaging agents W Lee, RP St. Onge, M Proctor, P Flaherty, MI Jordan, AP Arkin, RW Davis, ... PLoS genetics 1 (2), e24, 2005 | 193 | 2005 |
| Ultrasensitive detection of rare mutations using next-generation targeted resequencing P Flaherty, G Natsoulis, O Muralidharan, M Winters, J Buenrostro, J Bell, ... Nucleic Acids Research, 2011 | 177 | 2011 |
| Metastatic tumor evolution and organoid modeling implicate TGFBR2 as a cancer driver in diffuse gastric cancer LD Nadauld, S Garcia, G Natsoulis, JM Bell, L Miotke, ES Hopmans, H Xu, ... Genome Biology 15 (428), 2014 | 144 | 2014 |
| Identification of a new class of antifungals targeting the synthesis of fungal sphingolipids V Mor, A Rella, AM Farnoud, A Singh, M Munshi, A Bryan, S Naseem, ... MBio 6 (3), 10.1128/mbio. 00647-15, 2015 | 136 | 2015 |
| Robust design of biological experiments P Flaherty, A Arkin, M Jordan Advances in neural information processing systems 18, 2005 | 102 | 2005 |
| A latent variable model for chemogenomic profiling P Flaherty, G Giaever, J Kumm, MI Jordan, AP Arkin Bioinformatics 21 (15), 3286-3293, 2005 | 92 | 2005 |
| Systematic genomic identification of colorectal cancer genes delineating advanced from early clinical stage and metastasis HJ Lee, P Flaherty, HP Ji BMC medical genomics 6, 1-15, 2013 | 58 | 2013 |
| Prediction of multiple infections after severe burn trauma: a prospective cohort study S Yan, A Tsurumi, YA Que, CM Ryan, A Bandyopadhaya, AA Morgan, ... Annals of surgery 261 (4), 781-792, 2015 | 50 | 2015 |
| A dual receptor crosstalk model of G-protein-coupled signal transduction P Flaherty, ML Radhakrishnan, T Dinh, RA Rebres, TI Roach, MI Jordan, ... PLoS computational biology 4 (9), e1000185, 2008 | 49 | 2008 |
| GLAD: a mixed-membership model for heterogeneous tumor subtype classification H Saddiki, J McAuliffe, P Flaherty Bioinformatics 31 (2), 225-232, 2015 | 22 | 2015 |
| Targeted metabolomic profiling reveals association between altered amino acids and poor functional recovery after stroke X Wang, T Liu, H Song, S Cui, G Liu, A Christoforou, P Flaherty, X Luo, ... Frontiers in Neurology 10, 1425, 2020 | 18 | 2020 |
| Conditional genetic screen in Physcomitrella patens reveals a novel microtubule depolymerizing-end-tracking protein X Ding, LM Pervere, C Bascom Jr, JP Bibeau, S Khurana, AM Butt, RG Orr, ... PLoS Genetics 14 (5), e1007221, 2018 | 17 | 2018 |
| GEMINI: a computationally-efficient search engine for large gene expression datasets T DeFreitas, H Saddiki, P Flaherty BMC bioinformatics 17, 1-7, 2016 | 17 | 2016 |
| Reverse chemical genetics: comprehensive fitness profiling reveals the spectrum of drug target interactions LH Wong, S Sinha, JR Bergeron, JC Mellor, G Giaever, P Flaherty, ... PLoS Genetics 12 (9), e1006275, 2016 | 15 | 2016 |
| Robotic assistive device for phlebotomy P Carvalho, A Kesari, S Weaver, P Flaherty, GS Fischer International Design Engineering Technical Conferences and Computers and …, 2015 | 14 | 2015 |
| SCSIM: Jointly simulating correlated single-cell and bulk next-generation DNA sequencing data C Giguere, HV Dubey, VK Sarsani, H Saddiki, S He, P Flaherty BMC bioinformatics 21, 1-10, 2020 | 10 | 2020 |
Adam Paul ArkinDepartment of Bioengineering, University of California, Berkeley, Physical Biosciences Division, E.OVerified email at lbl.gov
