Krishna Choudhary
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Comparative and integrative analysis of RNA structural profiling data: current practices and emerging questions
K Choudhary, F Deng, S Aviran
Quantitative Biology, 1-22, 2017
Probing of RNA structures in a positive sense RNA virus reveals selection pressures for structural elements
KE Watters, K Choudhary, S Aviran, JB Lucks, KL Perry, JR Thompson
Nucleic acids research 46 (5), 2573-2584, 2018
Metrics for rapid quality control in RNA structure probing experiments
K Choudhary, NP Shih, F Deng, M Ledda, B Li, S Aviran
Bioinformatics 32 (23), 3575-3583, 2016
Protein Distributions from a Stochastic Model of the lac Operon of E. coli with DNA Looping: Analytical solution and comparison with experiments
K Choudhary, S Oehler, A Narang
PLoS One 9 (7), e102580, 2014
dStruct: identifying differentially reactive regions from RNA structurome profiling data
K Choudhary, YH Lai, EJ Tran, S Aviran
Genome biology 20 (1), 1-26, 2019
Stability and nuclear localization of yeast telomerase depend on protein components of RNase P/MRP
PD Garcia, RW Leach, GM Wadsworth, K Choudhary, H Li, S Aviran, ...
Nature communications 11 (1), 1-19, 2020
Re-programming DNA-binding specificity in zinc finger proteins for targeting unique address in a genome
A Grover, A Pande, K Choudhary, K Gupta, D Sundar
Systems and synthetic biology 4 (4), 323-329, 2010
SEQualyzer: interactive tool for quality control and exploratory analysis of high-throughput RNA structural profiling data
K Choudhary, L Ruan, F Deng, N Shih, S Aviran
Bioinformatics 33 (3), 441-443, 2017
Genome-wide discovery of DEAD-box RNA helicase targets reveals RNA structural remodeling in transcription termination
YH Lai, K Choudhary, SC Cloutier, Z Xing, S Aviran, EJ Tran
Genetics 212 (1), 153-174, 2019
Analytical Expressions and Physics for Single-Cell mRNA Distributions of the lac Operon of E. coli
K Choudhary, A Narang
Biophysical journal 117 (3), 572-586, 2019
Addition formulas for the and generalized hypergeometric functions with arbitrary parameters and their Kummer- and Euler-type transformations
K Choudhary
arXiv preprint arXiv:2001.03815, 2020
Transient Cell Cycle Induction in Cardiomyocytes to Treat Ischemic Heart Failure
R Abouleisa, Q Ou, XL Tang, M Solanki, Y Guo, Y Nong, L Mcnally, ...
Urn models for stochastic gene expression yield intuitive insights into the probability distributions of single-cell mRNA and protein counts
K Choudhary, A Narang
Physical Biology 17 (6), 066001, 2020
scNetViz: from single cells to networks using Cytoscape
K Choudhary, EC Meng, JJ Diaz-Mejia, GD Bader, AR Pico, JH Morris
F1000Research 10 (448), 448, 2021
Phenotypic Differences between the Alzheimer’s Disease-Related hAPP-J20 Model and Heterozygous Zbtb20 Knock-Out Mice
DR Gulbranson, K Ho, GQ Yu, X Yu, M Das, E Shao, D Kim, WJ Zhang, ...
Eneuro 8 (3), 2021
Integration of Protein Interactome Networks with Congenital Heart Disease Variants Reveals Candidate Disease Genes
BG Teran, M Pittman, F Felix, D Richmond-Buccola, R Thomas, ...
bioRxiv, 2021.01. 05.423837, 2021
Statistical Methods and Software for Comparative Analysis of RNA Structurome Profiling Data
K Choudhary
University of California, Davis, 2019
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