Alexis Battle
Alexis Battle
Associate Professor, Biomedical Engineering, Johns Hopkins University
Verified email at cs.jhu.edu - Homepage
TitleCited byYear
Efficient sparse coding algorithms
H Lee, A Battle, R Raina, AY Ng
Advances in neural information processing systems, 801-808, 2007
26212007
The genotype-tissue expression (GTEx) project
J Lonsdale, J Thomas, M Salvatore, R Phillips, E Lo, S Shad, R Hasz, ...
Nature genetics 45 (6), 580, 2013
21232013
The Genotype-Tissue Expression (GTEx) pilot analysis: multitissue gene regulation in humans
GTEx Consortium
Science 348 (6235), 648-660, 2015
17472015
Self-taught learning: transfer learning from unlabeled data
R Raina, A Battle, H Lee, B Packer, AY Ng
Proceedings of the 24th international conference on Machine learning, 759-766, 2007
13382007
Genetic effects on gene expression across human tissues
GTEx Consortium
Nature 550 (7675), 204, 2017
5092017
Genome-wide association study in Asian populations identifies variants in ETS1 and WDFY4 associated with systemic lupus erythematosus
W Yang, N Shen, DQ Ye, Q Liu, Y Zhang, XX Qian, N Hirankarn, D Ying, ...
PLoS genetics 6 (2), e1000841, 2010
3472010
Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals
A Battle, S Mostafavi, X Zhu, JB Potash, MM Weissman, C McCormick, ...
Genome research 24 (1), 14-24, 2014
3212014
A community effort to assess and improve drug sensitivity prediction algorithms
JC Costello, LM Heiser, E Georgii, M Gönen, MP Menden, NJ Wang, ...
Nature biotechnology 32 (12), 1202, 2014
3072014
Impact of regulatory variation from RNA to protein
A Battle, Z Khan, SH Wang, A Mitrano, MJ Ford, JK Pritchard, Y Gilad
Science 347 (6222), 664-667, 2015
2112015
The jabberwocky programming environment for structured social computing
S Ahmad, A Battle, Z Malkani, S Kamvar
Proceedings of the 24th annual ACM symposium on User interface software and …, 2011
1472011
Effect of predicted protein-truncating genetic variants on the human transcriptome
MA Rivas, M Pirinen, DF Conrad, M Lek, EK Tsang, KJ Karczewski, ...
Science 348 (6235), 666-669, 2015
1412015
Ranking documents based on user behavior and/or feature data
JA Dean, C Anderson, A Battle
US Patent 7,716,225, 2010
1362010
Decomposing gene expression into cellular processes
E Segal, A Battle, D Koller
Biocomputing 2003, 89-100, 2002
1302002
Query revision using known highly-ranked queries
DR Bailey, AJ Battle, DA Cohn, B Engelhardt, PP Nayak
US Patent 7,870,147, 2011
1222011
Integration of multiple query revision models
DR Bailey, AJ Battle, BA Gomes, PP Nayak
US Patent 7,565,345, 2009
1022009
Estimating confidence for query revision models
DR Bailey, AJ Battle, BA Gomes, PP Nayak
US Patent 7,617,205, 2009
1012009
Dynamic landscape and regulation of RNA editing in mammals
MH Tan, Q Li, R Shanmugam, R Piskol, J Kohler, AN Young, KI Liu, ...
Nature 550 (7675), 249, 2017
932017
Automated identification of pathways from quantitative genetic interaction data
A Battle, MC Jonikas, P Walter, JS Weissman, D Koller
Molecular systems biology 6 (1), 379, 2010
862010
Type I interferon signaling genes in recurrent major depression: increased expression detected by whole-blood RNA sequencing
S Mostafavi, A Battle, X Zhu, JB Potash, MM Weissman, J Shi, K Beckman, ...
Molecular psychiatry 19 (12), 1267, 2014
852014
Synchronized age-related gene expression changes across multiple tissues in human and the link to complex diseases
J Yang, T Huang, F Petralia, Q Long, B Zhang, C Argmann, Y Zhao, ...
Scientific reports 5, 15145, 2015
772015
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