Justin Chu
Justin Chu
Michael Smith Genome Sciences Centre
Verified email at bcgsc.ca
Title
Cited by
Cited by
Year
Comprehensive molecular characterization of gastric adenocarcinoma
Cancer Genome Atlas Research Network
Nature 513 (7517), 202-209, 2014
23192014
Somatic mutations at EZH2 Y641 act dominantly through a mechanism of selectively altered PRC2 catalytic activity, to increase H3K27 trimethylation
DB Yap, J Chu, T Berg, M Schapira, SWG Cheng, A Moradian, RD Morin, ...
Blood, The Journal of the American Society of Hematology 117 (8), 2451-2459, 2011
4882011
ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter
SD Jackman, BP Vandervalk, H Mohamadi, J Chu, S Yeo, SA Hammond, ...
Genome research 27 (5), 768-777, 2017
1862017
NanoSim: nanopore sequence read simulator based on statistical characterization
C Yang, J Chu, RL Warren, I Birol
GigaScience 6 (4), gix010, 2017
572017
BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters
J Chu, S Sadeghi, A Raymond, SD Jackman, KM Nip, R Mar, ...
Bioinformatics 30 (23), 3402-3404, 2014
542014
ARCS: scaffolding genome drafts with linked reads
S Yeo, L Coombe, RL Warren, J Chu, I Birol
Bioinformatics 34 (5), 725-731, 2018
47*2018
Innovations and challenges in detecting long read overlaps: an evaluation of the state-of-the-art
J Chu, H Mohamadi, RL Warren, C Yang, I Birol
Bioinformatics 33 (8), 1261-1270, 2017
362017
Organellar Genomes of White Spruce ( Picea glauca ): Assembly and Annotation
SD Jackman, RL Warren, EA Gibb, BP Vandervalk, H Mohamadi, J Chu, ...
Genome biology and evolution 8 (1), 29-41, 2016
332016
ntHash: recursive nucleotide hashing
H Mohamadi, J Chu, BP Vandervalk, I Birol
Bioinformatics 32 (22), 3492-3494, 2016
222016
Tigmint: correcting assembly errors using linked reads from large molecules
SD Jackman, L Coombe, J Chu, RL Warren, BP Vandervalk, S Yeo, Z Xue, ...
BMC bioinformatics 19 (1), 1-10, 2018
152018
ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers
L Coombe, J Zhang, BP Vandervalk, J Chu, SD Jackman, I Birol, ...
BMC bioinformatics 19 (1), 234, 2018
122018
Konnector v2. 0: pseudo-long reads from paired-end sequencing data
BP Vandervalk, C Yang, Z Xue, K Raghavan, J Chu, H Mohamadi, ...
BMC medical genomics 8 (3), S1, 2015
122015
Konnector: Connecting paired-end reads using a bloom filter de Bruijn graph
BP Vandervalk, SD Jackman, A Raymond, H Mohamadi, C Yang, ...
2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2014
112014
DIDA: Distributed indexing dispatched alignment
H Mohamadi, BP Vandervalk, A Raymond, SD Jackman, J Chu, ...
PloS one 10 (4), 2015
92015
Jupiter Plot: A Circos-Based Tool to Visualize Genome Assembly Consistency (Version 1.0)
J Chu
Zenodo. Available online: https://zenodo. org/record/1241235#. XA92q2hKiUk …, 2018
7*2018
The genome of the North American brown bear or grizzly: Ursus arctos ssp. horribilis
GA Taylor, H Kirk, L Coombe, SD Jackman, J Chu, K Tse, D Cheng, ...
Genes 9 (12), 598, 2018
62018
Kollector: transcript-informed, targeted de novo assembly of gene loci
E Kucuk, J Chu, BP Vandervalk, SA Hammond, RL Warren, I Birol
Bioinformatics 33 (12), 1782-1788, 2017
62017
Spaced seed data structures for de novo assembly
I Birol, J Chu, H Mohamadi, SD Jackman, K Raghavan, BP Vandervalk, ...
International journal of genomics 2015, 2015
6*2015
RNA-Bloom provides lightweight reference-free transcriptome assembly for single cells
KM Nip, R Chiu, C Yang, J Chu, H Mohamadi, RL Warren, I Birol
bioRxiv, 701607, 2019
32019
TAP: a targeted clinical genomics pipeline for detecting transcript variants using RNA-seq data
R Chiu, KM Nip, J Chu, I Birol
BMC medical genomics 11 (1), 79, 2018
32018
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Articles 1–20