Justin Chu
Justin Chu
UBC & BCGSC
Verified email at bcgsc.ca
TitleCited byYear
Comprehensive molecular characterization of gastric adenocarcinoma
Cancer Genome Atlas Research Network
Nature 513 (7517), 202, 2014
18662014
Somatic mutations at EZH2 Y641 act dominantly through a mechanism of selectively altered PRC2 catalytic activity, to increase H3K27 trimethylation
DB Yap, J Chu, T Berg, M Schapira, SWG Cheng, A Moradian, RD Morin, ...
Blood 117 (8), 2451-2459, 2011
4392011
ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter
SD Jackman, BP Vandervalk, H Mohamadi, J Chu, S Yeo, SA Hammond, ...
Genome research 27 (5), 768-777, 2017
1222017
BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters
J Chu, S Sadeghi, A Raymond, SD Jackman, KM Nip, R Mar, ...
Bioinformatics 30 (23), 3402-3404, 2014
462014
NanoSim: nanopore sequence read simulator based on statistical characterization
C Yang, J Chu, RL Warren, I Birol
GigaScience 6 (4), gix010, 2017
352017
ARCS: scaffolding genome drafts with linked reads
S Yeo, L Coombe, RL Warren, J Chu, I Birol
Bioinformatics 34 (5), 725-731, 2017
30*2017
Innovations and challenges in detecting long read overlaps: an evaluation of the state-of-the-art
J Chu, H Mohamadi, RL Warren, C Yang, I Birol
Bioinformatics 33 (8), 1261-1270, 2016
252016
Organellar Genomes of White Spruce ( Picea glauca ): Assembly and Annotation
SD Jackman, RL Warren, EA Gibb, BP Vandervalk, H Mohamadi, J Chu, ...
Genome biology and evolution 8 (1), 29-41, 2015
232015
ntHash: recursive nucleotide hashing
H Mohamadi, J Chu, BP Vandervalk, I Birol
Bioinformatics 32 (22), 3492-3494, 2016
142016
Konnector v2. 0: pseudo-long reads from paired-end sequencing data
BP Vandervalk, C Yang, Z Xue, K Raghavan, J Chu, H Mohamadi, ...
BMC medical genomics 8 (3), S1, 2015
102015
Konnector: Connecting paired-end reads using a bloom filter de Bruijn graph
BP Vandervalk, SD Jackman, A Raymond, H Mohamadi, C Yang, ...
2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2014
102014
Dida: Distributed indexing dispatched alignment
H Mohamadi, BP Vandervalk, A Raymond, SD Jackman, J Chu, ...
PloS one 10 (4), e0126409, 2015
62015
Tigmint: correcting assembly errors using linked reads from large molecules
SD Jackman, L Coombe, J Chu, RL Warren, BP Vandervalk, S Yeo, Z Xue, ...
BMC bioinformatics 19 (1), 393, 2018
52018
Kollector: transcript-informed, targeted de novo assembly of gene loci
E Kucuk, J Chu, BP Vandervalk, SA Hammond, RL Warren, I Birol
Bioinformatics 33 (12), 1782-1788, 2017
52017
Spaced seed data structures for de novo assembly
I Birol, J Chu, H Mohamadi, SD Jackman, K Raghavan, BP Vandervalk, ...
International journal of genomics 2015, 2015
4*2015
The genome of the North American brown bear or grizzly: Ursus arctos ssp. horribilis
GA Taylor, H Kirk, L Coombe, SD Jackman, J Chu, K Tse, D Cheng, ...
Genes 9 (12), 598, 2018
32018
ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers
L Coombe, J Zhang, BP Vandervalk, J Chu, SD Jackman, I Birol, ...
BMC bioinformatics 19 (1), 234, 2018
22018
TAP: a targeted clinical genomics pipeline for detecting transcript variants using RNA-seq data
R Chiu, KM Nip, J Chu, I Birol
BMC medical genomics 11 (1), 79, 2018
12018
ChopStitch: exon annotation and splice graph construction using transcriptome assembly and whole genome sequencing data
H Khan, H Mohamadi, BP Vandervalk, RL Warren, J Chu, I Birol
Bioinformatics 34 (10), 1697-1704, 2017
12017
ntPack: a software package for big data in genomics
I Birol, H Mohamadi, J Chu
2018 IEEE/ACM 5th International Conference on Big Data Computing …, 2018
2018
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Articles 1–20