Justin Chu
Justin Chu
Dana-Farber Cancer Institute
Verified email at ds.dfci.harvard.edu
Cited by
Cited by
Comprehensive molecular characterization of gastric adenocarcinoma
Cancer Genome Atlas Research Network
Nature 513 (7517), 202-209, 2014
Somatic mutations at EZH2 Y641 act dominantly through a mechanism of selectively altered PRC2 catalytic activity, to increase H3K27 trimethylation
DB Yap, J Chu, T Berg, M Schapira, SWG Cheng, A Moradian, RD Morin, ...
Blood 117 (8), 2451-2459, 2011
ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter
SD Jackman, BP Vandervalk, H Mohamadi, J Chu, S Yeo, SA Hammond, ...
Genome research 27 (5), 768-777, 2017
NanoSim: nanopore sequence read simulator based on statistical characterization
C Yang, J Chu, RL Warren, I Birol
GigaScience 6 (4), gix010, 2017
ARCS: scaffolding genome drafts with linked reads
S Yeo, L Coombe, RL Warren, J Chu, I Birol
Bioinformatics 34 (5), 725-731, 2018
BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters
J Chu, S Sadeghi, A Raymond, SD Jackman, KM Nip, R Mar, ...
Bioinformatics 30 (23), 3402-3404, 2014
Innovations and challenges in detecting long read overlaps: an evaluation of the state-of-the-art
J Chu, H Mohamadi, RL Warren, C Yang, I Birol
Bioinformatics 33 (8), 1261-1270, 2017
Organellar Genomes of White Spruce ( Picea glauca ): Assembly and Annotation
SD Jackman, RL Warren, EA Gibb, BP Vandervalk, H Mohamadi, J Chu, ...
Genome biology and evolution 8 (1), 29-41, 2016
ntHash: recursive nucleotide hashing
H Mohamadi, J Chu, BP Vandervalk, I Birol
Bioinformatics 32 (22), 3492-3494, 2016
Tigmint: correcting assembly errors using linked reads from large molecules
SD Jackman, L Coombe, J Chu, RL Warren, BP Vandervalk, S Yeo, Z Xue, ...
Bmc Bioinformatics 19 (1), 1-10, 2018
ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers
L Coombe, J Zhang, BP Vandervalk, J Chu, SD Jackman, I Birol, ...
BMC bioinformatics 19 (1), 1-10, 2018
Konnector v2. 0: pseudo-long reads from paired-end sequencing data
BP Vandervalk, C Yang, Z Xue, K Raghavan, J Chu, H Mohamadi, ...
BMC Medical Genomics 8 (3), 1-10, 2015
Konnector: Connecting paired-end reads using a bloom filter de Bruijn graph
BP Vandervalk, SD Jackman, A Raymond, H Mohamadi, C Yang, ...
2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2014
The genome of the North American brown bear or grizzly: Ursus arctos ssp. horribilis
GA Taylor, H Kirk, L Coombe, SD Jackman, J Chu, K Tse, D Cheng, ...
Genes 9 (12), 598, 2018
DIDA: Distributed indexing dispatched alignment
H Mohamadi, BP Vandervalk, A Raymond, SD Jackman, J Chu, ...
PloS one 10 (4), e0126409, 2015
Kollector: transcript-informed, targeted de novo assembly of gene loci
E Kucuk, J Chu, BP Vandervalk, SA Hammond, RL Warren, I Birol
Bioinformatics 33 (12), 1782-1788, 2017
Spaced seed data structures for de novo assembly
I Birol, J Chu, H Mohamadi, SD Jackman, K Raghavan, BP Vandervalk, ...
International journal of genomics 2015, 2015
Jupiter Plot: A Circos-Based Tool to Visualize Genome Assembly Consistency (Version 1.0)
J Chu
Zenodo. Available online: https://zenodo. org/record/1241235#. XA92q2hKiUk …, 2018
RNA-Bloom enables reference-free and reference-guided sequence assembly for single-cell transcriptomes
KM Nip, R Chiu, C Yang, J Chu, H Mohamadi, RL Warren, I Birol
Genome research 30 (8), 1191-1200, 2020
TAP: a targeted clinical genomics pipeline for detecting transcript variants using RNA-seq data
R Chiu, KM Nip, J Chu, I Birol
BMC medical genomics 11 (1), 79, 2018
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