Follow
Carlos L. Araya
Carlos L. Araya
CEO, Jungla Inc.
Verified email at jungla.bio - Homepage
Title
Cited by
Cited by
Year
High-resolution mapping of protein sequence-function relationships
DM Fowler, CL Araya, SJ Fleishman, EH Kellogg, JJ Stephany, D Baker, ...
Nature methods 7 (9), 741-746, 2010
5902010
Captum: A unified and generic model interpretability library for pytorch
N Kokhlikyan, V Miglani, M Martin, E Wang, B Alsallakh, J Reynolds, ...
arXiv preprint arXiv:2009.07896, 2020
5552020
Genome-scale measurement of off-target activity using Cas9 toxicity in high-throughput screens
DW Morgens, M Wainberg, EA Boyle, O Ursu, CL Araya, CK Tsui, ...
Nature communications 8 (1), 15178, 2017
3292017
A fundamental protein property, thermodynamic stability, revealed solely from large-scale measurements of protein function
CL Araya, DM Fowler, W Chen, I Muniez, JW Kelly, S Fields
Proceedings of the National Academy of Sciences 109 (42), 16858-16863, 2012
2682012
Quantitative analysis of RNA-protein interactions on a massively parallel array reveals biophysical and evolutionary landscapes
JD Buenrostro, CL Araya, LM Chircus, CJ Layton, HY Chang, MP Snyder, ...
Nature biotechnology 32 (6), 562-568, 2014
2472014
Deep mutational scanning: assessing protein function on a massive scale
CL Araya, DM Fowler
Trends in biotechnology 29 (9), 435-442, 2011
2242011
Integrative analysis of RNA, translation, and protein levels reveals distinct regulatory variation across humans
C Cenik, ES Cenik, GW Byeon, F Grubert, SI Candille, D Spacek, ...
Genome research 25 (11), 1610-1621, 2015
2222015
Comparative analysis of regulatory information and circuits across distant species
AP Boyle, CL Araya, C Brdlik, P Cayting, C Cheng, Y Cheng, K Gardner, ...
Nature 512 (7515), 453-456, 2014
2222014
Sushi. R: flexible, quantitative and integrative genomic visualizations for publication-quality multi-panel figures
DH Phanstiel, AP Boyle, CL Araya, MP Snyder
Bioinformatics 30 (19), 2808-2810, 2014
1832014
Enrich: software for analysis of protein function by enrichment and depletion of variants
DM Fowler, CL Araya, W Gerard, S Fields
Bioinformatics 27 (24), 3430-3431, 2011
1392011
Regulatory analysis of the C. elegans genome with spatiotemporal resolution
CL Araya, T Kawli, A Kundaje, L Jiang, B Wu, D Vafeados, R Terrell, ...
Nature 512 (7515), 400-405, 2014
1202014
AceTree: a tool for visual analysis of Caenorhabditis elegans embryogenesis
TJ Boyle, Z Bao, JI Murray, CL Araya, RH Waterston
BMC bioinformatics 7, 1-14, 2006
1202006
Whole-genome sequencing of a laboratory-evolved yeast strain
CL Araya, C Payen, MJ Dunham, S Fields
BMC genomics 11, 1-10, 2010
1192010
Identification of significantly mutated regions across cancer types highlights a rich landscape of functional molecular alterations
CL Araya, C Cenik, JA Reuter, G Kiss, VS Pande, MP Snyder, ...
Nature genetics 48 (2), 117-125, 2016
952016
Captum: A unified and generic model interpretability library for PyTorch. arXiv 2020
N Kokhlikyan, V Miglani, M Martin, E Wang, B Alsallakh, J Reynolds, ...
arXiv preprint arXiv:2009.07896, 2009
552009
Genome-Wide Analysis of Nascent Transcription in Saccharomyces cerevisiae
A McKinlay, CL Araya, S Fields
G3: Genes| Genomes| Genetics 1 (7), 549-558, 2011
262011
Prioritizing genes for systematic variant effect mapping
D Kuang, R Truty, J Weile, B Johnson, K Nykamp, C Araya, RL Nussbaum, ...
Bioinformatics 36 (22-23), 5448-5455, 2020
102020
Systems and Methods for the Interpretation of Genetic and Genomic Variants via an Integrated Computational and Experimental Deep Mutational Learning Framework
CL Araya, JA Reuter, SR Padigepati, A Colavin
US Patent App. 16/011,753, 2018
82018
Molecular evidence platform for auditable, continuous optimization of variant interpretation in genetic and genomic testing and analysis
A Colavin, CL Araya, JA Reuter
US Patent 11,462,299, 2022
42022
Interpretation of Genetic and Genomic Variants via an Integrated Computational and Experimental Deep Mutational Learning Framework
CL Araya, JA Reuter, SR Padigepati, A Colavin
US Patent App. 16/624,225, 2021
42021
The system can't perform the operation now. Try again later.
Articles 1–20