| A predator unmasked: life cycle of Bdellovibrio bacteriovorus from a genomic perspective S Rendulic, P Jagtap, A Rosinus, M Eppinger, C Baar, C Lanz, H Keller, ... Science 303 (5658), 689-692, 2004 | 362 | 2004 |
| Complete genome sequence and analysis of Wolinella succinogenes C Baar, M Eppinger, G Raddatz, J Simon, C Lanz, O Klimmek, ... Proceedings of the National Academy of Sciences 100 (20), 11690-11695, 2003 | 251 | 2003 |
| A two‐step database search method improves sensitivity in peptide sequence matches for metaproteomics and proteogenomics studies P Jagtap, J Goslinga, JA Kooren, T McGowan, MS Wroblewski, ... Proteomics 13 (8), 1352-1357, 2013 | 139 | 2013 |
| Temporal quantitative proteomics by iTRAQ 2D-LC-MS/MS and corresponding mRNA expression analysis identify post-transcriptional modulation of actin-cytoskeleton regulators … VG Keshamouni, P Jagtap, G Michailidis, JR Strahler, R Kuick, AK Reka, ... Journal of proteome research 8 (1), 35-47, 2009 | 108 | 2009 |
| Deep metaproteomic analysis of human salivary supernatant P Jagtap, T McGowan, S Bandhakavi, ZJ Tu, S Seymour, TJ Griffin, ... Proteomics 12 (7), 992-1001, 2012 | 88 | 2012 |
| Multi-omic data analysis using Galaxy J Boekel, JM Chilton, IR Cooke, PL Horvatovich, PD Jagtap, L Käll, ... Nature biotechnology 33 (2), 137-139, 2015 | 85 | 2015 |
| Flexible and accessible workflows for improved proteogenomic analysis using the Galaxy framework PD Jagtap, JE Johnson, G Onsongo, FW Sadler, K Murray, Y Wang, ... Journal of proteome research 13 (12), 5898-5908, 2014 | 74 | 2014 |
| Relative quantification: characterization of bias, variability and fold changes in mass spectrometry data from iTRAQ-labeled peptides DW Mahoney, TM Therneau, CJ Heppelmann, LA Higgins, LM Benson, ... Journal of proteome research 10 (9), 4325-4333, 2011 | 73 | 2011 |
| Adaptation to low temperature and regulation of gene expression in Antarctic psychrotrophic bacteria MK Ray, GS Kumar, K Janiyani, K Kannan, P Jagtap, MK Basu, S Shivaji Journal of biosciences 23 (4), 423-435, 1998 | 63 | 1998 |
| Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations GM Sheynkman, JE Johnson, PD Jagtap, MR Shortreed, G Onsongo, ... BMC genomics 15 (1), 703, 2014 | 62 | 2014 |
| Early events of Bacillus anthracis germination identified by time‐course quantitative proteomics P Jagtap, G Michailidis, R Zielke, AK Walker, N Patel, JR Strahler, A Driks, ... Proteomics 6 (19), 5199-5211, 2006 | 46 | 2006 |
| Metaproteomic analysis using the Galaxy framework PD Jagtap, A Blakely, K Murray, S Stewart, J Kooren, JE Johnson, ... Proteomics 15 (20), 3553-3565, 2015 | 45 | 2015 |
| Proteomic Profiles in Acute Respiratory Distress Syndrome Differentiates Survivors from Non-Survivors. WCH Bhargava M, Becker TL, Viken KJ, Jagtap PD, Dey S, Steinbach MS, Wu B ... PLoS One 9 (10), doi: 10.1371/journal.pone.0109713, 2014 | 38* | 2014 |
| Protein relative abundance patterns associated with sucrose-induced dysbiosis are conserved across taxonomically diverse oral microcosm biofilm models of dental caries JD Rudney, PD Jagtap, CS Reilly, R Chen, TW Markowski, LA Higgins, ... Microbiome 3 (1), 69, 2015 | 34 | 2015 |
| Community-driven data analysis training for biology B Batut, S Hiltemann, A Bagnacani, D Baker, V Bhardwaj, C Blank, ... Cell systems 6 (6), 752-758. e1, 2018 | 29 | 2018 |
| Proteogenomic analysis of a hibernating mammal indicates contribution of skeletal muscle physiology to the hibernation phenotype KJ Anderson, KL Vermillion, P Jagtap, JE Johnson, TJ Griffin, ... Journal of proteome research 15 (4), 1253-1261, 2016 | 23 | 2016 |
| Characterizing cardiac molecular mechanisms of mammalian hibernation via quantitative proteogenomics KL Vermillion, P Jagtap, JE Johnson, TJ Griffin, MT Andrews Journal of proteome research 14 (11), 4792-4804, 2015 | 23 | 2015 |
| Disseminating metaproteomic informatics capabilities and knowledge using the Galaxy-P framework C Blank, C Easterly, B Gruening, J Johnson, CA Kolmeder, P Kumar, ... Proteomes 6 (1), 7, 2018 | 22 | 2018 |
| Progress and challenges in ocean metaproteomics and proposed best practices for data sharing MA Saito, EM Bertrand, ME Duffy, DA Gaylord, NA Held, WJ Hervey IV, ... Journal of proteome research 18 (4), 1461-1476, 2019 | 20 | 2019 |
| Iron-sparing Response of Mycobacterium avium subsp. paratuberculosis is strain dependent HK Janagama, JP Bannantine, A Kugadas, P Jagtap, LA Higgins, ... BMC microbiology 10 (1), 268, 2010 | 20 | 2010 |
Getiria OnsongoProfessor of Computer Science, Macalester CollegeVerified email at macalester.edu
