James Costello
James Costello
University of Colorado Anschutz Medical Campus
Verified email at ucdenver.edu - Homepage
Title
Cited by
Cited by
Year
Evolution of genes and genomes on the Drosophila phylogeny
Drosophila 12 Genomes Consortium
nature 450 (7167), 203, 2007
20062007
Wisdom of crowds for robust gene network inference
D Marbach, JC Costello, R Küffner, NM Vega, RJ Prill, DM Camacho, ...
Nature methods 9 (8), 796-804, 2012
13782012
A community effort to assess and improve drug sensitivity prediction algorithms
JC Costello, LM Heiser, E Georgii, M Gönen, MP Menden, NJ Wang, ...
Nature biotechnology 32 (12), 1202-1212, 2014
5272014
Bactericidal antibiotics induce mitochondrial dysfunction and oxidative damage in mammalian cells
S Kalghatgi, CS Spina, JC Costello, M Liesa, JR Morones-Ramirez, ...
Science translational medicine 5 (192), 192ra85-192ra85, 2013
3622013
Transcriptional profiling of stroma from inflamed and resting lymph nodes defines immunological hallmarks
D Malhotra, AL Fletcher, J Astarita, V Lukacs-Kornek, P Tayalia, ...
Nature immunology 13 (5), 499-510, 2012
3602012
Next-generation machine learning for biological networks
DM Camacho, KM Collins, RK Powers, JC Costello, JJ Collins
Cell 173 (7), 1581-1592, 2018
3472018
Oncogenic NRAS signaling differentially regulates survival and proliferation in melanoma
LN Kwong, JC Costello, H Liu, S Jiang, TL Helms, AE Langsdorf, ...
Nature medicine 18 (10), 1503-1510, 2012
3122012
TERT promoter mutations and telomerase reactivation in urothelial cancer
S Borah, L Xi, AJ Zaug, NM Powell, GM Dancik, SB Cohen, JC Costello, ...
Science 347 (6225), 1006-1010, 2015
2422015
A community computational challenge to predict the activity of pairs of compounds
M Bansal, J Yang, C Karan, MP Menden, JC Costello, H Tang, G Xiao, ...
Nature biotechnology 32 (12), 1213-1222, 2014
1922014
Tumor-derived cell lines as molecular models of cancer pharmacogenomics
A Goodspeed, LM Heiser, JW Gray, JC Costello
Molecular Cancer Research 14 (1), 3-13, 2016
1802016
Intrathymic programming of effector fates in three molecularly distinct γδ T cell subtypes
K Narayan, KE Sylvia, N Malhotra, CC Yin, G Martens, T Vallerskog, ...
Nature immunology 13 (5), 511-518, 2012
1772012
“Reverse ecology” and the power of population genomics
YF Li, JC Costello, AK Holloway, MW Hahn
Evolution: International Journal of Organic Evolution 62 (12), 2984-2994, 2008
1332008
Crowdsourcing biomedical research: leveraging communities as innovation engines
J Saez-Rodriguez, JC Costello, SH Friend, MR Kellen, L Mangravite, ...
Nature Reviews Genetics 17 (8), 470, 2016
1312016
Prediction of overall survival for patients with metastatic castration-resistant prostate cancer: development of a prognostic model through a crowdsourced challenge with open …
J Guinney, T Wang, TD Laajala, KK Winner, JC Bare, EC Neto, SA Khan, ...
The Lancet Oncology 18 (1), 132-142, 2017
1122017
Transcriptomes of the B and T lineages compared by multiplatform microarray profiling
MW Painter, S Davis, RR Hardy, D Mathis, C Benoist, ...
The Journal of Immunology 186 (5), 3047-3057, 2011
1012011
Concurrent alterations in TERT, KDM6A, and the BRCA pathway in bladder cancer
ML Nickerson, GM Dancik, KM Im, MG Edwards, S Turan, J Brown, ...
Clinical Cancer Research 20 (18), 4935-4948, 2014
912014
Transcriptome analysis identifies regulators of hematopoietic stem and progenitor cells
R Gazit, BS Garrison, TN Rao, T Shay, J Costello, J Ericson, F Kim, ...
Stem cell reports 1 (3), 266-280, 2013
842013
Gene networks in Drosophila melanogaster: integrating experimental data to predict gene function
JC Costello, MM Dalkilic, SM Beason, JR Gehlhausen, R Patwardhan, ...
Genome biology 10 (9), 1-29, 2009
672009
Coordinate loss of MAP3K7 and CHD1 promotes aggressive prostate cancer
LU Rodrigues, L Rider, C Nieto, L Romero, A Karimpour-Fard, M Loda, ...
Cancer research 75 (6), 1021-1034, 2015
652015
Molecular analysis of urothelial cancer cell lines for modeling tumor biology and drug response
ML Nickerson, N Witte, KM Im, S Turan, C Owens, K Misner, SX Tsang, ...
Oncogene 36 (1), 35-46, 2017
502017
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