Philip M. Kim
Philip M. Kim
Professor, University of Toronto
Verified email at kimlab.org - Homepage
TitleCited byYear
The genetic landscape of a cell
M Costanzo, A Baryshnikova, J Bellay, Y Kim, ED Spear, CS Sevier, ...
science 327 (5964), 425-431, 2010
19082010
Paired-end mapping reveals extensive structural variation in the human genome
JO Korbel, AE Urban, JP Affourtit, B Godwin, F Grubert, JF Simons, ...
Science 318 (5849), 420-426, 2007
11962007
The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics
H Yu, PM Kim, E Sprecher, V Trifonov, M Gerstein
PLoS computational biology 3 (4), e59, 2007
7682007
Classification of intrinsically disordered regions and proteins
R Van Der Lee, M Buljan, B Lang, RJ Weatheritt, GW Daughdrill, ...
Chemical reviews 114 (13), 6589-6631, 2014
7442014
The evolutionary landscape of alternative splicing in vertebrate species
NL Barbosa-Morais, M Irimia, Q Pan, HY Xiong, S Gueroussov, LJ Lee, ...
Science 338 (6114), 1587-1593, 2012
6372012
Relating three-dimensional structures to protein networks provides evolutionary insights
PM Kim, LJ Lu, Y Xia, MB Gerstein
Science 314 (5807), 1938-1941, 2006
4992006
Deciphering protein kinase specificity through large-scale analysis of yeast phosphorylation site motifs
J Mok, PM Kim, HYK Lam, S Piccirillo, X Zhou, GR Jeschke, DL Sheridan, ...
Sci. Signal. 3 (109), ra12-ra12, 2010
2922010
Tissue-specific alternative splicing remodels protein-protein interaction networks
JD Ellis, M Barrios-Rodiles, R «olak, M Irimia, TH Kim, JA Calarco, ...
Molecular cell 46 (6), 884-892, 2012
2882012
Subsystem identification through dimensionality reduction of large-scale gene expression data
PM Kim, B Tidor
Genome research 13 (7), 1706-1718, 2003
2492003
The role of disorder in interaction networks: a structural analysis
PM Kim, A Sboner, Y Xia, M Gerstein
Molecular systems biology 4 (1), 2008
1932008
Nucleotide-resolution analysis of structural variants using BreakSeq and a breakpoint library
HYK Lam, XJ Mu, AM StŁtz, A Tanzer, PD Cayting, M Snyder, PM Kim, ...
Nature biotechnology 28 (1), 47, 2010
1702010
Bayesian modeling of the yeast SH3 domain interactome predicts spatiotemporal dynamics of endocytosis proteins
R Tonikian, X Xin, CP Toret, D Gfeller, C Landgraf, S Panni, S Paoluzi, ...
PLoS biology 7 (10), e1000218, 2009
1632009
C2H2 zinc finger proteins greatly expand the human regulatory lexicon
HS Najafabadi, S Mnaimneh, FW Schmitges, M Garton, KN Lam, A Yang, ...
Nature biotechnology 33 (5), 555, 2015
1502015
Analysis of copy number variants and segmental duplications in the human genome: Evidence for a change in the process of formation in recent evolutionary history
PM Kim, HYK Lam, AE Urban, JO Korbel, J Affourtit, F Grubert, X Chen, ...
Genome research 18 (12), 1865-1874, 2008
1482008
Positive selection at the protein network periphery: evaluation in terms of structural constraints and cellular context
PM Kim, JO Korbel, MB Gerstein
Proceedings of the National Academy of Sciences 104 (51), 20274-20279, 2007
1392007
Bringing order to protein disorder through comparative genomics and genetic interactions
J Bellay, S Han, M Michaut, TH Kim, M Costanzo, BJ Andrews, C Boone, ...
Genome biology 12 (2), R14, 2011
1192011
The current excitement about copy-number variation: how it relates to gene duplications and protein families
JO Korbel, PM Kim, X Chen, AE Urban, S Weissman, M Snyder, ...
Current opinion in structural biology 18 (3), 366-374, 2008
1092008
High-resolution copy-number variation map reflects human olfactory receptor diversity and evolution
Y Hasin, T Olender, M Khen, C Gonzaga-Jauregui, PM Kim, AE Urban, ...
PLoS genetics 4 (11), e1000249, 2008
1052008
Coevolution of PDZ domain–ligand interactions analyzed by high-throughput phage display and deep sequencing
A Ernst, D Gfeller, Z Kan, S Seshagiri, PM Kim, GD Bader, SS Sidhu
Molecular BioSystems 6 (10), 1782-1790, 2010
1042010
An integrated system for studying residue coevolution in proteins
KY Yip, P Patel, PM Kim, DM Engelman, D McDermott, M Gerstein
Bioinformatics 24 (2), 290-292, 2007
1032007
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