Follow
Dan Knights
Title
Cited by
Cited by
Year
QIIME allows analysis of high-throughput community sequencing data
JG Caporaso, J Kuczynski, J Stombaugh, K Bittinger, FD Bushman, ...
Nature methods 7 (5), 335-336, 2010
333932010
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
114882019
Structure, function and diversity of the healthy human microbiome
nature 486 (7402), 207-214, 2012
96452012
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
MGI Langille, J Zaneveld, JG Caporaso, D McDonald, D Knights, ...
Nature biotechnology 31 (9), 814-821, 2013
80082013
Human gut microbiome viewed across age and geography
T Yatsunenko, FE Rey, MJ Manary, I Trehan, MG Dominguez-Bello, ...
nature 486 (7402), 222-227, 2012
77142012
Linking long-term dietary patterns with gut microbial enterotypes
GD Wu, J Chen, C Hoffmann, K Bittinger, YY Chen, SA Keilbaugh, ...
Science 334 (6052), 105-108, 2011
65892011
The treatment-naive microbiome in new-onset Crohn’s disease
D Gevers, S Kugathasan, LA Denson, Y VŠzquez-Baeza, W Van Treuren, ...
Cell host & microbe 15 (3), 382-392, 2014
30492014
UniFrac: an effective distance metric for microbial community comparison
C Lozupone, ME Lladser, D Knights, J Stombaugh, R Knight
The ISME journal 5 (2), 169-172, 2011
24572011
A framework for human microbiome research
nature 486 (7402), 215-221, 2012
22692012
Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans
BD Muegge, J Kuczynski, D Knights, JC Clemente, A GonzŠlez, ...
Science 332 (6032), 970-974, 2011
19192011
Bayesian community-wide culture-independent microbial source tracking
D Knights, J Kuczynski, ES Charlson, J Zaneveld, MC Mozer, RG Collman, ...
Nature methods 8 (9), 761-763, 2011
13582011
Moving pictures of the human microbiome
JG Caporaso, CL Lauber, EK Costello, D Berg-Lyons, A Gonzalez, ...
Genome biology 12 (5), 1-8, 2011
12442011
Gut microbiomes of Malawian twin pairs discordant for kwashiorkor
MI Smith, T Yatsunenko, MJ Manary, I Trehan, R Mkakosya, J Cheng, ...
Science 339 (6119), 548-554, 2013
12162013
Cohabiting family members share microbiota with one another and with their dogs
SJ Song, C Lauber, EK Costello, CA Lozupone, G Humphrey, ...
elife 2, e00458, 2013
10962013
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
8912018
Enterotypes in the landscape of gut microbial community composition
PI Costea, F Hildebrand, M Arumugam, F Bšckhed, MJ Blaser, ...
Nature microbiology 3 (1), 8-16, 2018
7952018
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
P Yilmaz, R Kottmann, D Field, R Knight, JR Cole, L Amaral-Zettler, ...
Nature biotechnology 29 (5), 415-420, 2011
6772011
The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins
NP McNulty, T Yatsunenko, A Hsiao, JJ Faith, BD Muegge, AL Goodman, ...
Science translational medicine 3 (106), 106ra106-106ra106, 2011
6392011
Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies
DM Gohl, P Vangay, J Garbe, A MacLean, A Hauge, A Becker, TJ Gould, ...
Nature biotechnology 34 (9), 942-949, 2016
6292016
American gut: an open platform for citizen science microbiome research
D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ...
Msystems 3 (3), 10.1128/msystems. 00031-18, 2018
6072018
The system can't perform the operation now. Try again later.
Articles 1–20