Connor T. Skennerton
TitleCited byYear
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
DH Parks, M Imelfort, CT Skennerton, P Hugenholtz, GW Tyson
Genome research 25 (7), 1043-1055, 2015
13992015
The khmer software package: enabling efficient nucleotide sequence analysis
MR Crusoe, HF Alameldin, S Awad, E Boucher, A Caldwell, R Cartwright, ...
F1000Research 4, 2015
1662015
An expanded genomic representation of the phylum Cyanobacteria
RM Soo, CT Skennerton, Y Sekiguchi, M Imelfort, SJ Paech, PG Dennis, ...
Genome biology and evolution 6 (5), 1031-1045, 2014
1512014
Crass: identification and reconstruction of CRISPR from unassembled metagenomic data
CT Skennerton, M Imelfort, GW Tyson
Nucleic acids research 41 (10), e105-e105, 2013
632013
Expanding our view of genomic diversity in Candidatus Accumulibacter clades
CT Skennerton, JJ Barr, FR Slater, PL Bond, GW Tyson
Environmental microbiology 17 (5), 1574-1585, 2015
532015
Phage encoded H-NS: a potential achilles heel in the bacterial defence system
CT Skennerton, FE Angly, M Breitbart, L Bragg, S He, KD McMahon, ...
PLoS One 6 (5), e20095, 2011
402011
Phylogenomic analysis of Candidatus ‘Izimaplasma’ species: free-living representatives from a Tenericutes clade found in methane seeps
CT Skennerton, MF Haroon, A Briegel, J Shi, GJ Jensen, GW Tyson, ...
The ISME journal 10 (11), 2679, 2016
312016
Metagenomic and metaproteomic analyses of Accumulibacter phosphatis‐enriched floccular and granular biofilm
JJ Barr, BE Dutilh, CT Skennerton, T Fukushima, ML Hastie, JJ Gorman, ...
Environmental microbiology 18 (1), 273-287, 2016
232016
Methane-fueled syntrophy through extracellular electron transfer: uncovering the genomic traits conserved within diverse bacterial partners of anaerobic methanotrophic archaea
CT Skennerton, K Chourey, R Iyer, RL Hettich, GW Tyson, VJ Orphan
MBio 8 (4), e00530-17, 2017
222017
Genomic reconstruction of an uncultured hydrothermal vent gammaproteobacterial methanotroph (family Methylothermaceae) indicates multiple adaptations to oxygen limitation
CT Skennerton, LM Ward, A Michel, K Metcalfe, C Valiente, S Mullin, ...
Frontiers in microbiology 6, 1425, 2015
222015
Proteomic stable isotope probing reveals biosynthesis dynamics of slow growing methane based microbial communities
JJ Marlow, CT Skennerton, Z Li, K Chourey, RL Hettich, C Pan, VJ Orphan
Frontiers in microbiology 7, 563, 2016
182016
In-solution fluorescence in situ hybridization and fluorescence-activated cell sorting for single cell and population genome recovery
MF Haroon, CT Skennerton, JA Steen, N Lachner, P Hugenholtz, ...
Methods in enzymology 531, 3-19, 2013
152013
Photosynthesis is not a universal feature of the phylum Cyanobacteria
RM Soo, CT Skennerton, Y Sekiguchi, M Imelfort, SJ Paech, PG Dennis, ...
PeerJ PrePrints, 2014
42014
Comparative Genomics and Proteomic Analysis of Assimilatory Sulfate Reduction Pathways in Anaerobic Methanotrophic Archaea
H Yu, D Susanti, SE McGlynn, CT Skennerton, K Chourey, R Iyer, ...
Frontiers in microbiology 9, 2917, 2018
12018
Systems Level Dissection of Anaerobic Methane Cycling: Quantitative Measurements of Single Cell Ecophysiology, Genetic Mechanisms, and Microbial Interactions
V Orphan, G Tyson, C Meile, S McGlynn, H Yu, G Chadwick, J Marlow, ...
California Inst. of Technology (CalTech), Pasadena, CA (United States), 2017
2017
Metabolic diversity and modeling of organisms involved in the anaerobic oxidation of methane
CT Skennerton, H Yu, G Chadwick, DR Speth, R Hatzenpichler, A Leu, ...
AGU Fall Meeting Abstracts, 2017
2017
Genomic insights into the metabolic potential and interactions between marine methanotrophic ANME archaea and associated bacteria
VJ Orphan, C Skennerton, G Chadwick, F Haroon, GW Tyson, A Leu, ...
AGU Fall Meeting Abstracts, 2015
2015
Phage-host Evolution in a Model Ecosystem
C Skennerton
2013
Comparative Genomics, Transcriptomic Analysis, and Ecophysiology of Individual Environmental Methane-oxidizing Syntrophic Consortia
CT Skennerton, G Chadwick, H Yu, R Malmstrom, T Woyke, ...
Supplementary Figures for
RM Soo, CT Skennerton, Y Sekiguchi, M Imelfort, SJ Paech, PG Dennis, ...
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Articles 1–20