Son Pham

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Pavel PevznerProfessor of Computer Science, University of California at San DiegoVerified email at eng.ucsd.edu
Nikolay Vyahhi-Verified email at bioinf.spbau.ru
Alexey GurevichSenior Researcher @ Center for Algorithmic Biotechnology, Saint Petersburg State UniversityVerified email at spbu.ru
Alexander SirotkinNational Research University Higher School of EconomicsVerified email at hse.ru
Max A. AlekseyevGeorge Washington UniversityVerified email at gwu.edu
Andrey PrjibelskiSenior Research Fellow @ Saint-Petersburg State UniversityVerified email at spbu.ru
Mikhail DvorkinSt. Petersburg Academic UniversityVerified email at rain.ifmo.ru
Alexander S. KulikovSteklov Institute of Mathematics at St. PetersburgVerified email at logic.pdmi.ras.ru
Sergey NikolenkoSteklov Institute of Mathematics at St. Petersburg, RussiaVerified email at logic.pdmi.ras.ru
Konstantin AvrachenkovDirector of Research, INRIA Sophia AntipolisVerified email at sophia.inria.fr
Benedict PatenAssociate Professor; Associate Director, UC Santa Cruz Genomics Institute, University of CaliforniaVerified email at ucsc.edu
Paul MedvedevPenn StateVerified email at cse.psu.edu
Kunal BhutaniJ. Craig Venter Institute, UCSDVerified email at ucsd.edu
Jennifer ErwinLieber Institute for Brain DevelopmentVerified email at libd.org
Mike McConnellInvestigator, Lieber Institute for Brain DevelopmentVerified email at libd.org
Dr. Rashel V. GrindbergPostdoctoral Research Fellow, ETH Zurich HönggerbergVerified email at ethz.ch
Nelly LitvakUniversity of Twente, COSTNET CA15109Verified email at utwente.nl
Mark ChaissonUniversity of Southern CaliforniaVerified email at usc.edu
Anand D. PatelBioinformatics and Systems Biology, University of California San DiegoVerified email at ucsd.edu
Anton KorobeynikovSaint Petersburg State UniversityVerified email at spbu.ru

Son Pham

BioTuring

Verified email at bioturing.com

Bioinformatics Genomics Graph Theory neuroscience ...


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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing A Bankevich, S Nurk, D Antipov, AA Gurevich, M Dvorkin, AS Kulikov, ... Journal of computational biology 19 (5), 455-477, 2012	15497	2012
Differential responses to lithium in hyperexcitable neurons from patients with bipolar disorder J Mertens, QW Wang, Y Kim, DX Yu, S Pham, B Yang, Y Zheng, ... Nature 527 (7576), 95-99, 2015	387	2015
Using single nuclei for RNA-seq to capture the transcriptome of postmortem neurons SR Krishnaswami, RV Grindberg, M Novotny, P Venepally, B Lacar, ... Nature protocols 11 (3), 499-524, 2016	258	2016
Ragout—a reference-assisted assembly tool for bacterial genomes M Kolmogorov, B Raney, B Paten, S Pham Bioinformatics 30 (12), i302-i309, 2014	143	2014
Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci J Lilue, AG Doran, IT Fiddes, M Abrudan, J Armstrong, R Bennett, ... Nature genetics 50 (11), 1574-1583, 2018	113	2018
Sibelia: a scalable and comprehensive synteny block generation tool for closely related microbial genomes I Minkin, A Patel, M Kolmogorov, N Vyahhi, S Pham International Workshop on Algorithms in Bioinformatics, 215-229, 2013	102	2013
Paired de bruijn graphs: a novel approach for incorporating mate pair information into genome assemblers P Medvedev, S Pham, M Chaisson, G Tesler, P Pevzner Journal of Computational Biology 18 (11), 1625-1634, 2011	102	2011
ExSPAnder: a universal repeat resolver for DNA fragment assembly AD Prjibelski, I Vasilinetc, A Bankevich, A Gurevich, T Krivosheeva, ... Bioinformatics 30 (12), i293-i301, 2014	95	2014
DRIMM-Synteny: decomposing genomes into evolutionary conserved segments SK Pham, PA Pevzner Bioinformatics 26 (20), 2509-2516, 2010	89	2010
TwoPaCo: an efficient algorithm to build the compacted de Bruijn graph from many complete genomes I Minkin, S Pham, P Medvedev Bioinformatics 33 (24), 4024-4032, 2017	72	2017
Mitochondrial aging defects emerge in directly reprogrammed human neurons due to their metabolic profile Y Kim, X Zheng, Z Ansari, MC Bunnell, JR Herdy, L Traxler, H Lee, ... Cell reports 23 (9), 2550-2558, 2018	68	2018
Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes D Thybert, M Roller, FCP Navarro, I Fiddes, I Streeter, C Feig, ... Genome research 28 (4), 448-459, 2018	67	2018
The Pharmacogenomics of Bipolar Disorder study (PGBD): identification of genes for lithium response in a prospective sample KJ Oedegaard, M Alda, A Anand, OA Andreassen, Y Balaraman, ... BMC psychiatry 16 (1), 1-15, 2016	66	2016
Pagerank based clustering of hypertext document collections K Avrachenkov, V Dobrynin, D Nemirovsky, SK Pham, E Smirnova Proceedings of the 31st annual international ACM SIGIR conference on …, 2008	62	2008
Chromosome assembly of large and complex genomes using multiple references M Kolmogorov, J Armstrong, BJ Raney, I Streeter, M Dunn, F Yang, ... Genome research 28 (11), 1720-1732, 2018	61	2018
Cerulean: A hybrid assembly using high throughput short and long reads V Deshpande, EDK Fung, S Pham, V Bafna International workshop on algorithms in bioinformatics, 349-363, 2013	56	2013
A singular perturbation approach for choosing the PageRank damping factor K Avrachenkov, N Litvak, KS Pham Internet Mathematics 5 (1-2), 47-69, 2008	41	2008
Distribution of PageRank mass among principle components of the web K Avrachenkov, N Litvak, K Pham Algorithms and Models for the Web-Graph, 16-28, 2007	38	2007
Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling ES Rice, S Kohno, JS John, S Pham, J Howard, LF Lareau, BL O'Connell, ... Genome research 27 (5), 686-696, 2017	34	2017
Pharmacogenomics of Bipolar Disorder Study. Differential responses to lithium in hyperexcitable neurons from patients with bipolar disorder J Mertens, QW Wang, Y Kim, DX Yu, S Pham, B Yang, Y Zheng, ... Nature 527 (7576), 95-99, 2015	33	2015

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