Fabien Burki

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Patrick KeelingUniversity of British ColumbiaVerified email at mail.ubc.ca
Pawlowski JanDepartment of Genetics and Evolution, Universiity of GenevaVerified email at unige.ch
Kamran Shalchian-TabriziDepartment of Biosciences, University of OsloVerified email at ibv.uio.no
Matthew W. BrownAssociate Professor, Department of Biological SciencesVerified email at msstate.edu
David BassCefas, The Natural History Museum, Oxford UniversityVerified email at cefas.co.uk
Alastair GB SimpsonProfessor, Department of Biology, Dalhousie UniversityVerified email at Dal.Ca
Micah DunthornNatural History Museum, University of OsloVerified email at nhm.uio.no
Jan JanouškovecInstitute of Microbiology, Czech Academy of SciencesVerified email at alga.cz
Jürgen F. H. StrassertLeibniz IGBVerified email at igb-berlin.de
Martin KoliskoLaboratory of Genomics and Diversity of Protists, Biology Centre, Czech Acad. Sci.Verified email at paru.cas.cz
Behzad ImanianIllinois Institute of Technology, Institute for Food Safety and HealthVerified email at interchange.ubc.ca
Laura Wegener ParfreyAssistant Professor, University of British ColumbiaVerified email at botany.ubc.ca
C. E. LaneUniversity of Rhode IslandVerified email at mail.uri.edu
Edward A. D. MitchellProfessor of Biology, University of NeuchâtelVerified email at unine.ch
Hilary McManusLe Moyne CollegeVerified email at lemoyne.edu
Adl S.M.Dalhousie University, University of SaskatchewanVerified email at usask.ca
Sonja RueckertAssociate Professor in Marine Biology/Parasitology at Edinburgh Napier UniversityVerified email at napier.ac.uk
Frederick SpiegelDistinguished Professor of Biological Sciences, University of ArkansasVerified email at uark.edu
Jean-Francois PombertAssociate Professor of Biology, Illinois Institute of TechnologyVerified email at iit.edu
Elisabeth HehenbergerPostdoctoral Fellow, Biology Center CAS, Institute of ParasitologyVerified email at paru.cas.cz

Fabien Burki

Uppsala University

Verified email at ebc.uu.se - Homepage

protists diversity tree of life endosymbiosis parasites


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The Revised Classification of Eukaryotes SM Adl, AGB Simpson, CE Lane, J Lukeš, D Bass, SS Bowser, MW Brown, ... Journal of Eukaryotic Microbiology 59 (5), 429-514, 2012	1647	2012
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing PJ Keeling, F Burki, HM Wilcox, B Allam, EE Allen, LA Amaral-Zettler, ... PLoS biology 12 (6), e1001889, 2014	703	2014
Revisions to the classification, nomenclature, and diversity of eukaryotes SM Adl, D Bass, CE Lane, J Lukeš, CL Schoch, A Smirnov, S Agatha, ... Journal of Eukaryotic Microbiology 66 (1), 4-119, 2019	527	2019
Phylogenomics reshuffles the eukaryotic supergroups F Burki, K Shalchian-Tabrizi, M Minge, Å Skjæveland, SI Nikolaev, ... PLoS One 2 (8), e790, 2007	439	2007
Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs BA Curtis, G Tanifuji, F Burki, A Gruber, M Irimia, S Maruyama, MC Arias, ... Nature 492 (7427), 59, 2012	343	2012
The Eukaryotic Tree of Life from a Global Phylogenomic Perspective F Burki Cold Spring Harbor Perspectives in Biology 6 (5), a016147, 2014	308	2014
Phylogenomics reveals a new ‘megagroup’including most photosynthetic eukaryotes F Burki, K Shalchian-Tabrizi, J Pawlowski Biology letters 4 (4), 366-369, 2008	290	2008
The evolutionary history of haptophytes and cryptophytes: phylogenomic evidence for separate origins F Burki, N Okamoto, JF Pombert, PJ Keeling Proceedings of the Royal Society B: Biological Sciences 279 (1736), 2246-2254, 2012	255	2012
AIR: a batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses S Kumar, Å Skjæveland, RJS Orr, P Enger, T Ruden, BH Mevik, F Burki, ... BMC bioinformatics 10 (1), 357, 2009	250	2009
Untangling the early diversification of eukaryotes: a phylogenomic study of the evolutionary origins of Centrohelida, Haptophyta and Cryptista F Burki, M Kaplan, DV Tikhonenkov, V Zlatogursky, BQ Minh, ... Proceedings of the Royal Society B: Biological Sciences 283 (1823), 20152802, 2016	212	2016
Birth and adaptive evolution of a hominoid gene that supports high neurotransmitter flux F Burki, H Kaessmann Nature genetics 36 (10), 1061-1063, 2004	207	2004
The new tree of eukaryotes F Burki, AJ Roger, MW Brown, AGB Simpson Trends in ecology & evolution 35 (1), 43-55, 2020	202	2020
Large-scale phylogenomic analyses reveal that two enigmatic protist lineages, Telonemia and Centroheliozoa, are related to photosynthetic chromalveolates F Burki, Y Inagaki, J Bråte, JM Archibald, PJ Keeling, T Cavalier-Smith, ... Genome Biology and Evolution 1, 231-238, 2009	162	2009
Major transitions in dinoflagellate evolution unveiled by phylotranscriptomics J Janouškovec, GS Gavelis, F Burki, D Dinh, TR Bachvaroff, SG Gornik, ... Proceedings of the National Academy of Sciences 114 (2), E171-E180, 2017	159	2017
Factors mediating plastid dependency and the origins of parasitism in apicomplexans and their close relatives J Janouškovec, DV Tikhonenkov, F Burki, AT Howe, M Kolísko, ... Proceedings of the National Academy of Sciences 112 (33), 10200-10207, 2015	147	2015
Untangling the Phylogeny of Amoeboid Protists J Pawlowski, F Burki Journal of Eukaryotic Microbiology 56 (1), 16-25, 2009	146	2009
Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists F Burki, A Kudryavtsev, MV Matz, GV Aglyamova, S Bulman, M Fiers, ... BMC evolutionary biology 10 (1), 1-18, 2010	131	2010
Evolutionary position of breviate amoebae and the primary eukaryote divergence MA Minge, JD Silberman, RJS Orr, T Cavalier-Smith, K Shalchian-Tabrizi, ... Proceedings of the Royal Society of London B: Biological Sciences 276 (1657 …, 2009	103	2009
Identifying and Characterizing Alternative Molecular Markers for the Symbiotic and Free-Living Dinoflagellate Genus Symbiodinium X Pochon, HM Putnam, F Burki, RD Gates PloS one 7 (1), e29816, 2012	98	2012
Collodictyon—an ancient lineage in the tree of eukaryotes S Zhao, F Burki, J Bråte, PJ Keeling, D Klaveness, K Shalchian-Tabrizi Molecular biology and evolution 29 (6), 1557-1568, 2012	97	2012

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